View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13118_low_12 (Length: 294)

Name: NF13118_low_12
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13118_low_12
NF13118_low_12
[»] chr3 (3 HSPs)
chr3 (3-165)||(6079191-6079352)
chr3 (14-91)||(11028675-11028752)
chr3 (230-266)||(6079090-6079126)
[»] chr6 (3 HSPs)
chr6 (3-100)||(19215354-19215449)
chr6 (232-268)||(13549165-13549201)
chr6 (3-70)||(13548896-13548963)
[»] scaffold0017 (2 HSPs)
scaffold0017 (12-95)||(39144-39228)
scaffold0017 (126-165)||(39286-39325)
[»] chr1 (1 HSPs)
chr1 (12-73)||(19190469-19190530)
[»] chr2 (1 HSPs)
chr2 (12-95)||(13652915-13652999)


Alignment Details
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 6079352 - 6079191
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnn 102  Q
    |||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||      
T  6079352 tgggtaaagtatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag-a 6079254  T
Q  103 nnnnnnnnccaaattattttctttgttcatcatctctatttacatcagactttcattttctac 165  Q
            ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079253 aaaaaaaaccaaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  14 tacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 91  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 6079126 - 6079090
Alignment:
Q  230 tgtaaacaaacctctctctctccaaaaaccttatgcc 266  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcc 6079090  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 19215354 - 19215449
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 100  Q
    |||||| | ||||||||||||||||||||||||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215354 tgggtaaagtatacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 13549165 - 13549201
Alignment:
Q  232 taaacaaacctctctctctccaaaaaccttatgcccc 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgcccc 13549201  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 13548896 - 13548963
Alignment:
Q  3 tgggtagattatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaa 70  Q
    |||||| | ||||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548896 tgggtaaagtatacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

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Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 39144 - 39228
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39144 tatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  126 tgttcatcatctctatttacatcagactttcattttctac 165  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 12 - 73
Target Start/End: Complemental strand, 19190530 - 19190469
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacacaaaaaattg 73  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190530 tatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 13652915 - 13652999
Alignment:
Q  12 tatacttgagtaacacaaagtaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 95  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652915 tatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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