View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13118_low_14 (Length: 266)
Name: NF13118_low_14
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_14 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 3641708 - 3641972
Alignment:
| Q |
14 |
agggcagttgctgaattcagcagactctgaatgaattttaagagactaaccatatagtgtttacagagagaaaggatcgtatcaaaag---------tta |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3641708 |
agggcagttgctgaattcagcagactctgaatgaattttaagagactaaccatataatgtttacagagagaaaggatcgtatcaaaaggttcaaaagtta |
3641807 |
T |
|
| Q |
105 |
taaatgaagtcaaaatttggccaacgtgttgttgcaagaatcaaattcacgatgtcaccggatcaaacttcat---atattttcactgatgttacctggt |
201 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3641808 |
taaatgaagtcaaaatttggccaacatgttgttacaagaatcaaattcacgatgtcaccggatcaaacttcatcatatattttcactgatgttacctggt |
3641907 |
T |
|
| Q |
202 |
ggctagaaggaatctatacaaatatcattaaatcacatagataaagtaaattataggcatttttc |
266 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3641908 |
ggctagaaggaatctatacaaataacattaaatcacatagataaagtaaattataggcatttttc |
3641972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University