View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_low_17 (Length: 258)
Name: NF13118_low_17
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_17 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 18025265 - 18025509
Alignment:
| Q |
13 |
aatatgatagtaaaacaataattttataactacaaatccatacaaagagctaaaatgcacagatcaaaatatgcaacatacatcaagacgttgggcctga |
112 |
Q |
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| T |
18025265 |
aatatgatagtaaaacaataattttataactacaag-ccatacaaagagctaaaatgcaaagatcaaaatatgcaacatacatcaagacgttgggcctga |
18025363 |
T |
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| Q |
113 |
gtaagatttccatgaagctcagcagctttcaatccagataatccaaaaataatcctcagcctatgtgccgcttgctttgttccactgcatatcaaatgcg |
212 |
Q |
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| T |
18025364 |
gtaagatttccatgaagctcagcagctttcaatccagataatccaaaaataatcctcagcctatgtgccgcttgctttgttccactgcatatcaaatgcg |
18025463 |
T |
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| Q |
213 |
aaagtatttagtagttagagttagaagaacagtgaacagaagttaa |
258 |
Q |
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| T |
18025464 |
aaagtatttagtagttagaattagaagaacagtgaacagaagttaa |
18025509 |
T |
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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 119
Target Start/End: Complemental strand, 17231419 - 17231380
Alignment:
| Q |
80 |
aatatgcaacatacatcaagacgttgggcctgagtaagat |
119 |
Q |
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| T |
17231419 |
aatatgcaacatacatcaagacgttgggcctgagtaagat |
17231380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 19675377 - 19675556
Alignment:
| Q |
54 |
acaaagagctaaaatgcacagatcaaaatatgcaacatacatcaagacgttgggcctgagtaagatttccatgaagctcagcagctttcaatccagataa |
153 |
Q |
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| T |
19675377 |
acaaagacctaaaatagacacatcagaataagaaacatactcccagacgttgggcctgagtaagatttccatgaagctcagcagctttcaatccagataa |
19675476 |
T |
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| Q |
154 |
tccaaaaataatcctcagcctatgtgccgcttgctttgttccactgcatatc-aaatgcgaaagtatttagtagttagag |
232 |
Q |
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| T |
19675477 |
tccaaatataatcctcaatctatgtgcagcttgcttcgttccactgcatatcaaaatgagaaattattaagtagttagag |
19675556 |
T |
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