View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13118_low_18 (Length: 257)

Name: NF13118_low_18
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13118_low_18
NF13118_low_18
[»] chr3 (3 HSPs)
chr3 (17-192)||(42982843-42983019)
chr3 (189-257)||(7181348-7181419)
chr3 (191-256)||(14428610-14428678)
[»] chr7 (1 HSPs)
chr7 (189-257)||(39871581-39871652)
[»] chr8 (2 HSPs)
chr8 (190-257)||(32675725-32675795)
chr8 (189-225)||(36245912-36245948)
[»] chr2 (2 HSPs)
chr2 (190-257)||(40607701-40607771)
chr2 (191-257)||(27560206-27560275)
[»] chr4 (3 HSPs)
chr4 (191-257)||(5743627-5743696)
chr4 (191-257)||(35675888-35675957)
chr4 (186-250)||(2615920-2615987)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 42982843 - 42983019
Alignment:
Q  17 accctcttcaacatattctccatccactgctcaatacaacaagattaatgcttcaattatgtttctaaaccaaacaatatatatttcaactaatcacaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42982843 accctcttcaacatattctccatccactgctcaatacaacaagattaatgtttcaattatgtttctaaaccaaacaatatatatttcaactaatcacaaa 42982942  T
Q  117 tttgtatttcattagtaaaataagaagatg-aaattttttgctttgaaagataaaaatactactctacaaaacaata 192  Q
    ||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  42982943 tttttatttcattagtaaaataagaagatgaaaaatgtttgctttgaaagataaaaatactactctacaaaacaata 42983019  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 7181348 - 7181419
Alignment:
Q  189 aatactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    ||||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  7181348 aatactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacccctttg 7181419  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 14428610 - 14428678
Alignment:
Q  191 tactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactccttt 256  Q
    ||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| |||||    
T  14428610 tactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagaccccttt 14428678  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 39871652 - 39871581
Alignment:
Q  189 aatactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    ||||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  39871652 aatactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacccctttg 39871581  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 32675795 - 32675725
Alignment:
Q  190 atactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    |||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  32675795 atactccctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacccctttg 32675725  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 36245948 - 36245912
Alignment:
Q  189 aatactccctccgtccctaattagacccttttgagaa 225  Q
    |||||| |||||||||||||| |||||||||||||||    
T  36245948 aatactacctccgtccctaataagacccttttgagaa 36245912  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 40607701 - 40607771
Alignment:
Q  190 atactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    |||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  40607701 atactccctccgtccctaattataagacccttttgagaaatttttttgtccctttttataagacccctttg 40607771  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Original strand, 27560206 - 27560275
Alignment:
Q  191 tactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    ||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  27560206 tactccctccgtccctaattataagacccttttgagaaaaatttttgtccctttttataagacccctttg 27560275  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 5743696 - 5743627
Alignment:
Q  191 tactccctccgtccctaatt---agacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    ||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||    
T  5743696 tactccctccgtccctaattataagacccttttgagaaaaaaatttgtccctttttataagacccctttg 5743627  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 35675957 - 35675888
Alignment:
Q  191 tactccctccgtccctaatta---gacccttttgagaaannnnnnngtccctttttataagactcctttg 257  Q
    |||||||||||||||||||||   ||||||||||| |||       ||||||||||||||||||||||||    
T  35675957 tactccctccgtccctaattataagacccttttgaaaaaaaaatttgtccctttttataagactcctttg 35675888  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 2615987 - 2615920
Alignment:
Q  186 aacaatactccctccgtcccta---attagacccttttgagaaannnnnnngtccctttttataagac 250  Q
    ||||||||||||||||||||||   || ||||||||||||||||       |||||||||||||||||    
T  2615987 aacaatactccctccgtccctaatcataagacccttttgagaaatttttttgtccctttttataagac 2615920  T

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