View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_low_19 (Length: 249)
Name: NF13118_low_19
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 3642189 - 3641957
Alignment:
| Q |
17 |
attgtcattgacgacttgtataacaattatgcagtccttgtttacaagcctcaagagcatatacccttataccatacacagactgacatacagatggatt |
116 |
Q |
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| T |
3642189 |
attgtcattgacgacttgtataacaattatgcagtccttgtttacaagcctcaagagcatatacccttataccatacacagactgacatacagatggatt |
3642090 |
T |
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| Q |
117 |
ttctgttacatgccttttagaattgtactatcatgtgttaatatgttgttgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaat |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3642089 |
ttctgttacatgccttttagaattgtaccatcatgtgttaatatgttgttgtaagagaatctaattgcaaatggacataacttacatcacaaatccaaat |
3641990 |
T |
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| Q |
217 |
gtgaatatctctatgctgaaaaatgcctataat |
249 |
Q |
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| T |
3641989 |
gtgaatatctctatgctgaaaaatgcctataat |
3641957 |
T |
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