View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13118_low_2 (Length: 536)
Name: NF13118_low_2
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_2 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Original strand, 18024765 - 18025288
Alignment:
| Q |
13 |
aatattggagagatttggaagggagagatgatgtgttaataaaattttagaagattgactaaaatcctcccttctctcaaccaaacataatatctcatct |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18024765 |
aatattggagggatttggaagggagagatgatgtcttaataaaattttagaagattgactaaaatcctcccttctctcaaccaaacataatatctcatct |
18024864 |
T |
|
| Q |
113 |
aatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaataaattggtcttcctcttaagctaatctagtttca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18024865 |
aatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaataaattgatcttcctcttaagctaatctagtttca |
18024964 |
T |
|
| Q |
213 |
ctatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataaaagagaactatgagtcgactcttttacaacgaatt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
18024965 |
ctatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataaaagagaaatatgagtcgactcttttacaacgaatt |
18025064 |
T |
|
| Q |
313 |
cttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaaagcctatacaaataaccagaagtgataagtattgc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18025065 |
cttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaaagcctatacaaataaccagaagtgataagtattgc |
18025164 |
T |
|
| Q |
413 |
cacaacagcattaaatgtagcaattccttttagcagaaaatttatgaataaattttacaaaaaataatccgaatcagcttcatcaatttagtatcctaaa |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18025165 |
cacaacagcattaaatgtagcaattccttttagcagaaaatttatgaataaattttacaaaaaataatctgaatcagcttcatcaatttagtatcctaaa |
18025264 |
T |
|
| Q |
513 |
aatatgatagtaaaacaataattt |
536 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18025265 |
aatatgatagtaaaacaataattt |
18025288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 17231458 - 17231416
Alignment:
| Q |
137 |
atttaaattattctatttgtttgaaccaaacatgcccttaata |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17231458 |
atttaaattattctatttgtttgaaccaaacatgcctttaata |
17231416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 1e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 78 - 429
Target Start/End: Original strand, 19674913 - 19675257
Alignment:
| Q |
78 |
cctcccttctctcaaccaaacataatatctcatctaatcctttcctccccctcccttccatttaaattattctatttgtttgaaccaaacatgcccttaa |
177 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||| |||||| ||||| ||||||| |||||||| |
|
|
| T |
19674913 |
cctcccttctcccaaccaaacacaatatctcatccaatcctttat-----ctcccttccatttaaattcctctattcatttgagccaaacaggcccttaa |
19675007 |
T |
|
| Q |
178 |
taaattggtcttcctcttaagctaatctagtttcactatcattatcccgtgttgggaatatgcaataaaagatatattaatactatattcaaagtgataa |
277 |
Q |
| |
|
||||| | || |||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
19675008 |
caaatttatgtttctcttaagctaacctagtttcactatcattatcttgtgttgggaatatagaataaaa--tatattaatactagattcaaagtgataa |
19675105 |
T |
|
| Q |
278 |
aagagaactatgagtcgactcttttacaacgaattcttacacgagcagccacatcagtcgcaaccaaaaaatccacttgctgcttcctgaactgttccaa |
377 |
Q |
| |
|
| |||| || || |||| || || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| || | |||||| |
|
|
| T |
19675106 |
ga-agaaataaacttcagttcttgtagaatagattcttacacgagcagccacatcagttgcaaccagaaaatccacttgctgcttcctaaattcttccaa |
19675204 |
T |
|
| Q |
378 |
agcctatacaaataaccagaagtga-taagtattgccacaacagcattaaatg |
429 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| |||||| |||| |
|
|
| T |
19675205 |
agcctatacaaataaccagaagtgagcaaatattgccacaatagcattcaatg |
19675257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University