View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13118_low_25 (Length: 227)
Name: NF13118_low_25
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_25 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 19337692 - 19337918
Alignment:
| Q |
1 |
catcaaattttgagtcaaactcaacaataacaacgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataattaaaactatgat |
100 |
Q |
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| T |
19337692 |
catcaaattttgagtcaaactcaacaataacaacgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataattaaaactatgat |
19337791 |
T |
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| Q |
101 |
taagtacagttttagatcaaagttttatggcctgagcaaagccccgcttttattgcctttgtttatgtattgtcgataagatatttcctccaccaatgac |
200 |
Q |
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| T |
19337792 |
taagtacagttttagatcaaagttttatggcctgagcaaagccccgcttttattgcctttgtttatgtattgtcgataagatatttcctccaccaatgac |
19337891 |
T |
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| Q |
201 |
ttactgagattcacattttatctcaaa |
227 |
Q |
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| T |
19337892 |
taactgagattcacattttatctcaaa |
19337918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19428154 - 19428248
Alignment:
| Q |
1 |
catcaaattttgagtcaaactcaacaataacaacgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataattaaaact |
95 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19428154 |
catcaaattttgagtcaaactcaacaataacaatgtggaaaaacattttgaagcctaaactctcaagtgtaaatgtataataaataattaaaact |
19428248 |
T |
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