View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13118_low_4 (Length: 429)

Name: NF13118_low_4
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13118_low_4
NF13118_low_4
[»] chr1 (2 HSPs)
chr1 (10-302)||(10333582-10333873)
chr1 (319-374)||(10334059-10334114)
[»] chr7 (3 HSPs)
chr7 (331-377)||(37473678-37473724)
chr7 (331-377)||(15905640-15905686)
chr7 (335-377)||(42712026-42712068)
[»] chr3 (2 HSPs)
chr3 (320-377)||(13448376-13448433)
chr3 (320-377)||(2667915-2667972)
[»] chr5 (2 HSPs)
chr5 (319-377)||(16773859-16773917)
chr5 (319-377)||(29173542-29173600)
[»] chr2 (1 HSPs)
chr2 (331-377)||(33582037-33582083)
[»] chr8 (1 HSPs)
chr8 (333-377)||(40791861-40791905)
[»] chr4 (1 HSPs)
chr4 (319-375)||(4185145-4185201)


Alignment Details
Target: chr1 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 10 - 302
Target Start/End: Original strand, 10333582 - 10333873
Alignment:
Q  10 gcacagacgagagatggaaggatggttagaatgtgaaatgggttgatcttgtgcggaaagtgcgccataaataattactacgaaccacatgttgtaatag 109  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10333582 gcactgacgagagatggaaggatggttagaatgtgagatgggttgatcttgttcggaaagtgcgccataaataattactacgaaccacatgttgtaatag 10333681  T
Q  110 tctatgatacaaaagtttaatttacttctctcttctctcnnnnnnnnnnngaagtttaatttactaaattttcttcaaagatattctatggaaaatatat 209  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10333682 tctatgatacaaaagtttaatttacttctctcttctctcaaaaagaa----aagtttaatttactaaattttcttcaaagatattctatggaaaatatat 10333777  T
Q  210 gttcacacttctagttatactggtcatatc--nnnnnnntgtataggtatacagtttcttt-gataaggtcatggagaacttcatcaacacttttt 302  Q
    ||||||||||||||||||||||| |||| |         ||| |||||||||||||| ||| ||||||||||| ||||| ||||||| ||||||||    
T  10333778 gttcacacttctagttatactggccataccaaaaaaaaatgtctaggtatacagtttttttggataaggtcattgagaagttcatcagcacttttt 10333873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 10334114 - 10334059
Alignment:
Q  319 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaattta 374  Q
    ||||||| |||||||| ||  |||||||||||||| ||||||||||||||||||||    
T  10334114 ctcctcgaggtatcagattttattttccctaatgtcaatttaggtgggctaattta 10334059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 37473678 - 37473724
Alignment:
Q  331 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||||    
T  37473678 tcaggttcgattctccctaatgtcaatttaggtgggttaatttagct 37473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 15905686 - 15905640
Alignment:
Q  331 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||||||||| |||||||||| ||||| |||||| ||||||||||    
T  15905686 tcaggttcgattctccctaatgtcaatttgggtgggttaatttagct 15905640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 377
Target Start/End: Original strand, 42712026 - 42712068
Alignment:
Q  335 gttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||||| |||||| ||| |||||||||||||||||||||||    
T  42712026 gttcgattctccctagtgtcaatttaggtgggctaatttagct 42712068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 13448376 - 13448433
Alignment:
Q  320 tcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||| ||| |||||||| |||||| ||| ||| |||||||||||||||||||||||    
T  13448376 tcctcgaggtctcaggttcaattttctctactgtcaatttaggtgggctaatttagct 13448433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 2667915 - 2667972
Alignment:
Q  320 tcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||| ||| |||||||||||| || ||| ||| ||||||||||||||| |||||||    
T  2667915 tcctcgaggtctcaggttcgattatctctagtgtcaatttaggtgggctagtttagct 2667972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 16773859 - 16773917
Alignment:
Q  319 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    ||||||| ||| |||||||||||| || || |||  |||||||||||||||||||||||    
T  16773859 ctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgggctaatttagct 16773917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 377
Target Start/End: Original strand, 29173542 - 29173600
Alignment:
Q  319 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    ||||||| ||| |||||||||||| || ||  ||| |||||||||||||||||||||||    
T  29173542 ctcctcgaggtttcaggttcgattatctctggtgtcaatttaggtgggctaatttagct 29173600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 33582037 - 33582083
Alignment:
Q  331 tcaggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    |||||||||||| || ||||||| ||||||||||| |||||||||||    
T  33582037 tcaggttcgattctctctaatgtcaatttaggtggactaatttagct 33582083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 40791905 - 40791861
Alignment:
Q  333 aggttcgattttccctaatgttaatttaggtgggctaatttagct 377  Q
    ||||||||||||| ||| ||| |||||| ||||||||||||||||    
T  40791905 aggttcgattttctctagtgtcaatttaagtgggctaatttagct 40791861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 4185145 - 4185201
Alignment:
Q  319 ctcctcgtggtatcaggttcgattttccctaatgttaatttaggtgggctaatttag 375  Q
    ||||||| ||| ||| | |||||| |||||| ||| |||||||||||||||||||||    
T  4185145 ctcctcgaggtctcaagatcgattctccctagtgtcaatttaggtgggctaatttag 4185201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University