View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13118_low_9 (Length: 341)
Name: NF13118_low_9
Description: NF13118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13118_low_9 |
 | |
|
| [»] scaffold1838 (1 HSPs) |
| | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 40729479 - 40729240
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40729479 |
tgttttatatggaaattgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctat |
40729380 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatttgactgt |
200 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40729379 |
atttttttt-atgaattaaataatagaaagatgaacatgtgaatttgtgaaatggtggacttttggttgtgtgtttgatgatgcgttaatatttgactgt |
40729281 |
T |
|
| Q |
201 |
aattgtcttagtggcggggtataattatttttagtgtggtg |
241 |
Q |
| |
|
||||||||||||||| || ||||||||| || |||||||| |
|
|
| T |
40729280 |
aattgtcttagtggcaggttataattatattctgtgtggtg |
40729240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 36732236 - 36732028
Alignment:
| Q |
13 |
aagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctaca--nnnnnnnnn |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
36732236 |
aagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgctggaaaagaaatgtcacatttgttttttg |
36732137 |
T |
|
| Q |
111 |
acgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactgtaattgtctt |
209 |
Q |
| |
|
| ||||||| || ||||||||||| |||||||||||||||||||| ||||||| | ||||||| ||||||||| |||||| |||| |||||||| ||| |
|
|
| T |
36732136 |
atgaattaaggaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcgtgatgatgcattaatacttgattgtaattgcctt |
36732037 |
T |
|
| Q |
210 |
agtggcggg |
218 |
Q |
| |
|
|| |||||| |
|
|
| T |
36732036 |
aggggcggg |
36732028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 18292798 - 18292601
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
18292798 |
tgttttatatgaaagttgtgtgtgataatgtagtgtgaattgatatattttatattattatgctttatatatttttgtgatgttggaaaagaaatgttac |
18292699 |
T |
|
| Q |
101 |
a-nnnnnnnnnacgaattaa--ataatagaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatttg |
195 |
Q |
| |
|
| | |||| || | || ||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
18292698 |
attttttttttatgaataaaagaaaagagaaagatgaaaatgtgagtttgtgaaatgattgacggttggttgtgtgtttgatgatgcattaatatttg |
18292601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40447603 - 40447819
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||| ||| |
|
|
| T |
40447603 |
tgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatg-ttttgtggcgttggaaaagtaatgttac |
40447701 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| | || ||||| || | |||||||| |||||||||||||||||||| ||||||| | |||||| |||||||||| |||||| ||||||| |
|
|
| T |
40447702 |
a-ttttcttgatgatttaaagaagaaaaagatgataatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactg |
40447800 |
T |
|
| Q |
200 |
taattgtcttagtggcggg |
218 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
40447801 |
taattgccttagtggcggg |
40447819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 41340778 - 41340687
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||| || ||| |||||||||||||||||| ||||||| ||||||||| || ||||| |
|
|
| T |
41340778 |
tgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtatgttttatattattatgcttgatatgttcttgtgatgtagggaaaga |
41340687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 12774911 - 12774875
Alignment:
| Q |
60 |
atgctttatatgtttttgtgatgttggaaaagaaatg |
96 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
12774911 |
atgctttatttgtttttgtgatgttagaaaagaaatg |
12774875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 9e-58; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 49170356 - 49170116
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
49170356 |
tgttttatatgaaagttgtgtatgataatatggtgtgaattgatatattttatattaatgcgctttatatgtttttgtgatgttggaaaagaaatgttac |
49170257 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| | |||||||| || ||||||||||| |||||||||||||||||||| ||||||| | ||||||| |||||||||| |||||| |||| || |
|
|
| T |
49170256 |
a-tttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgaatg |
49170158 |
T |
|
| Q |
200 |
taattgtcttagtggcggggtataattatttttagtgtggtg |
241 |
Q |
| |
|
|||||| |||||||||||| | ||||||| || |||||||| |
|
|
| T |
49170157 |
taattgccttagtggcgggttgtaattatattctgtgtggtg |
49170116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 12911783 - 12911571
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || ||||||| || |||||||||| |||||||||| | ||||| | ||||||||||||||||| ||| |
|
|
| T |
12911783 |
tgttttatatgaaagttgtgtatgataatgtgatgcgaattgacattttttatattaatatgctttatttattttttttatgttggaaaagaaatgttac |
12911684 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaa--ataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgac |
197 |
Q |
| |
|
| | ||||||| | || |||| ||||| |||||||||||||||||||| ||||||| | |||||| |||||||||| |||||||||||| |
|
|
| T |
12911683 |
a---tttttgatgaattaaagaaaaaagaactatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatatttgac |
12911587 |
T |
|
| Q |
198 |
tgtaattgtcttagtg |
213 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
12911586 |
tgtaattgccttagtg |
12911571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 22077912 - 22077985
Alignment:
| Q |
125 |
agaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatttgact |
198 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22077912 |
agaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgtgtgtttgatgatgcgttaatatttgact |
22077985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 10289298 - 10289207
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||| || | | |||||||||||||||||| ||||||| ||||||||| || ||||| |
|
|
| T |
10289298 |
tgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaaga |
10289207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 214
Target Start/End: Complemental strand, 12196600 - 12196537
Alignment:
| Q |
151 |
aatgatggacttttgattgtgtgtttgatgatgcgttaatatttgactgtaattgtcttagtgg |
214 |
Q |
| |
|
|||||| |||| ||| |||||||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
12196600 |
aatgattgactgttggttgtgtgtctgatgatgcgttaatatttggctgtaattgccttagtgg |
12196537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 40691027 - 40691245
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
40691027 |
tgttttagatgaaagttgtgtatgataatgtggtgtgaattgatatattttatatcaatgcgctttatatgtttttgtgatgttggaaaagaaatgttac |
40691126 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| | |||||||| || | ||||||||| |||||||||||||||||||| ||||||| | ||||||| |||||||||| |||||| ||||||| |
|
|
| T |
40691127 |
attttttttgatgaattaaagaagaaaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgactg |
40691226 |
T |
|
| Q |
200 |
taattgtcttagtggcggg |
218 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
40691227 |
gaattgccttagtggcggg |
40691245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30909913 - 30910129
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| |||||||||| ||||||||| || || ||||||||||||||||||||||||||||||||||||| | |||||||||||| |||| ||| |
|
|
| T |
30909913 |
tgttttatatgaaagttgtgtacgataatgtgatgcgagttgatatattttatattattatgctttatatgttttttttatgttggaaaagtaatgttac |
30910012 |
T |
|
| Q |
101 |
annnnnnnnnacgaatt----aaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttg |
195 |
Q |
| |
|
| ||||||| ||| || |||| |||||| ||||| |||||||||||||| || |||| | |||||| ||||| |||| |||||| ||| |
|
|
| T |
30910013 |
a---tttttgacgaattaaagaaaaaaaagaacgatgaaaatgtgtgtttgtgaaatgattgaattttggtttgtgtacttgatcatgcattaatacttg |
30910109 |
T |
|
| Q |
196 |
actgtaattgtcttagtggc |
215 |
Q |
| |
|
| |||||||| ||||||||| |
|
|
| T |
30910110 |
attgtaattgccttagtggc |
30910129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 92
Target Start/End: Original strand, 38001023 - 38001086
Alignment:
| Q |
29 |
tgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38001023 |
tgtgatgtgaaatgatatattttatgctattatgctttatatgtttttgtgatgttggaaaaga |
38001086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 55162307 - 55162524
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55162307 |
tgttttatatgaaagttgtgtatgataatgtggtgtgaattagtatattttatattaatgcgctttatatgtttttgtgatgttggaaaagaaatgttac |
55162406 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| | |||||||| || ||||||||||| |||||||||||||||||||| ||||||| | ||||||| |||||||||| |||||| || |||| |
|
|
| T |
55162407 |
a-tttttttgatgaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttaactg |
55162505 |
T |
|
| Q |
200 |
taattgtcttagtggcggg |
218 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
55162506 |
taattgcattagtggcggg |
55162524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 40459076 - 40459288
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
40459076 |
tgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatg-ttttgtgatgttggaaaagaaatgttac |
40459174 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| |||||||| || |||||||| || ||||||||||||||||| ||||||| | ||||||| |||||||||| |||||| |||| || |
|
|
| T |
40459175 |
attttctttggtgaattaaagaagagaaagat----atatgagtttgtgaaatgattgacttttggtttgtgtgcttgatgatgcattaatacttgaatg |
40459270 |
T |
|
| Q |
200 |
taattgtcttagtggcgg |
217 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
40459271 |
taattgccttagtggcgg |
40459288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 28969151 - 28969072
Alignment:
| Q |
125 |
agaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatttgactgtaatt |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||| |||||||||||| ||||||| |
|
|
| T |
28969151 |
agaaagatgaaaatgtgagtttgtgaaatgattgacttttggttgtgtgtttcatgatgagttaatatttgagtgtaatt |
28969072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 338230 - 338446
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
338230 |
tgttttatatgaaagtagtgtatgataatgtggtgtggattgatatattttatattattatgctttatatg-ttttgtggcgttggaaaagaaatgttac |
338328 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaatatttgactg |
199 |
Q |
| |
|
| | |||||||| || | |||||||| |||||||||||||||||||| ||||||| | |||||| |||||||||| |||||| ||||||| |
|
|
| T |
338329 |
a-ttttcttgatgaattaaagaagaaaaagatgagaatgtgagtttgtgaaatgattgacttttggtttgtgtacttgatgatgcattaatacttgactg |
338427 |
T |
|
| Q |
200 |
taattgtcttagtggcggg |
218 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
338428 |
taattgccttagtggcggg |
338446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 8421719 - 8421909
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
8421719 |
tgttttatatgaaagttgtgtatgataatgtggtgtgaattgatatattttatattaatgcgctttatatgttcttgtgatgttggaaaagaaatgttac |
8421818 |
T |
|
| Q |
101 |
annnnnnnnnacgaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggactttt-gattgtgtgtttgatgatgcgttaata |
191 |
Q |
| |
|
| | ||||||| || ||||||||||| ||||||||||||||||||| ||||||| | ||||||| |||||||||| |||||| |
|
|
| T |
8421819 |
a-tttttttgattaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgactgacttttggtttgtgtgcttgatgatgcattaata |
8421909 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 9537319 - 9537204
Alignment:
| Q |
125 |
agaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatttgactgtaattgtcttagtggcggggtataa |
224 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| |||||||||||||| |||||| ||||| |
|
|
| T |
9537319 |
agaaagatgaaaatgtgagtttgtgaaatgatggacttttggttgcgtgtttgaccatgcgtt-atatttgattgtaattgtcttagcggcgggttataa |
9537221 |
T |
|
| Q |
225 |
ttatttttagtgtggtg |
241 |
Q |
| |
|
|||| || |||||||| |
|
|
| T |
9537220 |
ttatattctgtgtggtg |
9537204 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43407874 - 43407783
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||| || | | |||||||||||||||||| ||||||| ||||||||| || ||||| |
|
|
| T |
43407874 |
tgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaaga |
43407783 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 26317343 - 26317423
Alignment:
| Q |
16 |
ttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatg |
96 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||||||| | |||||| ||||||| | ||||||||||||| ||||||||| |
|
|
| T |
26317343 |
ttgtgtatgaaaatgtgatgtagaatgatatattttatgtgattatgttttatatatctttgtgatgttgggaaagaaatg |
26317423 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1838 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1838
Description:
Target: scaffold1838; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 461 - 579
Alignment:
| Q |
125 |
agaaagatgaacatgtgagtttgtgaaatgatggacttttgattg-tgtgttt-gatgatgcgttaatatttgactgtaattgtcttagtggcggggtat |
222 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||| ||||||| ||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
461 |
agaaagttgaaaatgtgagtttgtgaaatgatgaacttttggttggtgtgttttgatgatgtgttaatatttgactgtaattgccttagtggcgggttat |
560 |
T |
|
| Q |
223 |
aattatttttagtgtggtg |
241 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
561 |
aattatattctgtgtggtg |
579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 33349 - 33284
Alignment:
| Q |
36 |
tgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaagaaatgctaca |
101 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
33349 |
tgaattgatatattttatcttattatgttttatatgtttttgtgatgtaggaaaagaaatgttaca |
33284 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 33257 - 33205
Alignment:
| Q |
113 |
gaattaaataatagaaagatgaacatgtgagtttgtgaaatgatggacttttg |
165 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
33257 |
gaattaaagaagagaaagatgaaaatgtgagtttgtgaaatgattgacttttg |
33205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 44436323 - 44436391
Alignment:
| Q |
125 |
agaaagatgaacatgtgagtttgtgaaatgatggacttttgattgtgtgtttgatgatgcgttaatatt |
193 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
44436323 |
agaaagatgaaaacgtgagattgtgaaatgattgacttttgcctgtgtgtttgatgatgcgttaatatt |
44436391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 41958407 - 41958344
Alignment:
| Q |
29 |
tgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
|||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41958407 |
tgtgatgtgaaataatatattttatgctattatgctttatatgtttttgtgatgttggaaaaga |
41958344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7337201 - 7337110
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
||||||||||| |||||||||||| ||||| |||||| || | | |||||||||||||||||| ||||||| ||||||||| || ||||| |
|
|
| T |
7337201 |
tgttttatatgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaaga |
7337110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 43278354 - 43278263
Alignment:
| Q |
1 |
tgttttatatgcaagttgtgtatgataatgtggtgtgaattgatatattttatattattatgctttatatgtttttgtgatgttggaaaaga |
92 |
Q |
| |
|
|||||||| || |||||||||||| ||||| |||||| || | | |||||||||||||||||| ||||||| ||||||||| || ||||| |
|
|
| T |
43278354 |
tgttttatgtgaaagttgtgtatgtggatgtgatgtgaactggtttgttttatattattatgcttgatatgttcttgtgatgtagggaaaga |
43278263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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