View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_14 (Length: 526)
Name: NF13119_high_14
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 203 - 511
Target Start/End: Complemental strand, 6994763 - 6994470
Alignment:
| Q |
203 |
ttattttgaagaatgtattcaaatatatatagttaacaagaggatttggcatataacatggttttggtgcagggagcagtatcacccaacattgcagcta |
302 |
Q |
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| T |
6994763 |
ttattttgaagaatgtattcaaatata----gttaacaagaggatttggcatataacatggttttggtgcagggagcagtatcacccaacattgcagcta |
6994668 |
T |
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| Q |
303 |
tgttacatagtcagtcaagtaccacttccacatctcagcttggaggtactttcaactctttcatcatatatttattgattttcatgttccaaattaatta |
402 |
Q |
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| T |
6994667 |
tgttacatagtcagtcaagtaccacttccacatctcagcttggaggtactttcaactctttcatcatatatttattgattttcatgttccaaattaatta |
6994568 |
T |
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| Q |
403 |
catataatataattcctcacataaacccttttgatttattacagatgaagatgcttcattgccacctagaccttcttcaatgcaaaccaatacttctgat |
502 |
Q |
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| T |
6994567 |
catataatat----------ataaaccc-tttgatttattacagatgaagatgcttcattgccacctagaccttcttcaatgcaaaccaatacttctgat |
6994479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 6995016 - 6994872
Alignment:
| Q |
10 |
attattctgtttatgtctgaattagtttaaaaaa-tagaaaaatataattacagcannnnnnnnn---caattatcttttaaaaaatagaatgaaataaa |
105 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6995016 |
attattctgtttatgtctgaattagtttaaaaaaatagaaaaatataattacagcattttttttctttcaattatcttttaaaaaatagaatgaaataaa |
6994917 |
T |
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| Q |
106 |
atgtaataacctctgtttttgtagcattttatttatattcaattt |
150 |
Q |
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| T |
6994916 |
atgtaataacctctgtttttgtagcattttattaatattcaattt |
6994872 |
T |
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