View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_16 (Length: 514)
Name: NF13119_high_16
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 393
Target Start/End: Original strand, 33441640 - 33442009
Alignment:
| Q |
22 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaag |
121 |
Q |
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| T |
33441640 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactg |
33441739 |
T |
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| Q |
122 |
gtnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctt |
221 |
Q |
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| T |
33441740 |
ggaaaaaaac--agcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctt |
33441837 |
T |
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| Q |
222 |
tggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggt |
321 |
Q |
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| T |
33441838 |
tggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggt |
33441937 |
T |
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| Q |
322 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
393 |
Q |
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| T |
33441938 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
33442009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 22 - 393
Target Start/End: Original strand, 33451860 - 33452229
Alignment:
| Q |
22 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaag |
121 |
Q |
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| T |
33451860 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactg |
33451959 |
T |
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| Q |
122 |
gtnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctt |
221 |
Q |
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| T |
33451960 |
ggaaaaaaac--agcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctt |
33452057 |
T |
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| Q |
222 |
tggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggt |
321 |
Q |
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| T |
33452058 |
tggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggt |
33452157 |
T |
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| Q |
322 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
393 |
Q |
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| T |
33452158 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
33452229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 33399629 - 33399693
Alignment:
| Q |
329 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtga |
393 |
Q |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtga |
33399693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 33395729 - 33395790
Alignment:
| Q |
316 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttg |
377 |
Q |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttg |
33395790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 50440322 - 50440382
Alignment:
| Q |
409 |
gatcgtccttgtgctgcatcggggcgtagaaccttgactgcaacaggtgtatggtccagaa |
469 |
Q |
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| T |
50440322 |
gatcgtccttgtgctgcatcggggcgtagaaccttgactgcaacaggtgtatggtccagaa |
50440382 |
T |
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