View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_high_20 (Length: 468)
Name: NF13119_high_20
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_20 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 424; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 41524081 - 41524524
Alignment:
| Q |
20 |
agacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttcc |
119 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524081 |
agacccgagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttcc |
41524180 |
T |
|
| Q |
120 |
ttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524181 |
ttcacttcgccatttctaacctcaactccagccaaaacatttttatcgccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcat |
41524280 |
T |
|
| Q |
220 |
ctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcct |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
41524281 |
ctaaccatttcttcttcgatttcctcagctccgaagcttcatgctccaatttaccaatcatttttctcaacacaccaagttgagtattatcctccatcct |
41524380 |
T |
|
| Q |
320 |
cttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41524381 |
cttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttc |
41524480 |
T |
|
| Q |
420 |
ttcaacttctcaacttcctcctctaattcattcttcttctcact |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41524481 |
ttcaacttctcaacttcctcctctaattcattcttcttctcact |
41524524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 436
Target Start/End: Original strand, 41515130 - 41515546
Alignment:
| Q |
20 |
agacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttcc |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| ||||| |
|
|
| T |
41515130 |
agacccaagcaatatctcaatcttacgtttctcatcagccaacttactcttttctttccccaacctacttatagtttccttatatttcttcactatttcc |
41515229 |
T |
|
| Q |
120 |
ttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcat |
219 |
Q |
| |
|
|||| |||||||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
41515230 |
ttcaattcgccatttttaacctcaaccccagccaaagcattcttatcaccctccaatacacgaaccttatttctaagcgcatcaaaagcattgccatcat |
41515329 |
T |
|
| Q |
220 |
ctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctcaacacaccaagttcattattatcctccatcct |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||| |
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|
| T |
41515330 |
ctaaccatttcttcttcgatttcctcaactccgaaacttcatgctccaatttaccaatcattttcctcaatacaccaagttcattattatcccccatcct |
41515429 |
T |
|
| Q |
320 |
cttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacatcaatttcatagctaccatcaacatattttttc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||||||||||| |||||||| ||||||||||| | |||| | | |
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|
| T |
41515430 |
cttttcattcaacttcctcaactccaaaatttcagactctaattcaccattctttcttcttaacacataaatttcattgctaccatcaaaacatttctcc |
41515529 |
T |
|
| Q |
420 |
ttcaacttctcaacttc |
436 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
41515530 |
ttcaacttttcaacttc |
41515546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 88 - 459
Target Start/End: Original strand, 41499389 - 41499760
Alignment:
| Q |
88 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
187 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || || || || |||||||||| |||| ||||||||||||| |||||||||||| |
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|
| T |
41499389 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagtttcaatcttaagtccagccaaatcattcttatcaccctccattacacgaacctt |
41499488 |
T |
|
| Q |
188 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
287 |
Q |
| |
|
| | | | ||||| ||||||||||||||| |||||||| |||||| | ||||||| |||| ||||||||||||| |||||||||||||||| ||| |
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|
| T |
41499489 |
gcttcgtacctcatcatgagcattgctatcatcaaaccattttttcttcaacttcctcaactccaaaacttcatgctctaatttaccaatcatttctctt |
41499588 |
T |
|
| Q |
288 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
387 |
Q |
| |
|
| |||| ||||||||||||||||||||| | |||||||||| || ||||||||||||||||| | || |||| ||| || ||||| ||||||||||| |
|
|
| T |
41499589 |
agcacaacaagttcattattatcctccagcatcttttcatttaatttcctcaactccaaaatttcagattctaattcaacaatctttgttcttaacacac |
41499688 |
T |
|
| Q |
388 |
caatttcatagctaccatcaacatattttttcttcaacttctcaacttcctcctctaattcattcttcttct |
459 |
Q |
| |
|
||| ||||| ||||||||||||| ||| | |||||| ||| |||||| |||||| |||||| ||||||| |
|
|
| T |
41499689 |
caacttcattgctaccatcaacaagtttctccttcaaattcataacttcaacctctagttcattgttcttct |
41499760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 88 - 393
Target Start/End: Original strand, 41503582 - 41503887
Alignment:
| Q |
88 |
ttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaacctt |
187 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||| ||| ||| || ||| || || |||||||| |||||||||||||||||| ||| ||||||| |
|
|
| T |
41503582 |
ttatagtttccaaattcttcttcattgtttccttcaattcaccagttttaatcttaaggtcagccaaatcatttttatcaccctccagaacatgaacctt |
41503681 |
T |
|
| Q |
188 |
attcctaagcgcatcaaaagcattgctatcatctaaccatttcttcttcgatttcctcagctccgaaacttcatgctccaatttaccaatcatttttctc |
287 |
Q |
| |
|
| | |||| ||||| |||| |||||| |||||| |||| |||||| | |||| | |||| ||||||||||||| |||||||||||||||| ||| |
|
|
| T |
41503682 |
gcttcgaagctcatcatgagcactgctattttctaacaattttttcttcaacctccttaactccaaaacttcatgctctaatttaccaatcatttctctt |
41503781 |
T |
|
| Q |
288 |
aacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcaccattctttcttcttaacacat |
387 |
Q |
| |
|
| |||| ||||||| ||||||||||||| | |||||||||| || |||||||||||||||| | || |||||| | |||| |||| ||||||||||||| |
|
|
| T |
41503782 |
agcacaacaagttcgttattatcctccaccatcttttcatttaatttcctcaactccaaaacttcagactctagtttaccagtcttacttcttaacacat |
41503881 |
T |
|
| Q |
388 |
caattt |
393 |
Q |
| |
|
|||||| |
|
|
| T |
41503882 |
caattt |
41503887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 114 - 226
Target Start/End: Original strand, 41519327 - 41519439
Alignment:
| Q |
114 |
gtttccttcacttcgccatttctaacctcaactccagccaaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgc |
213 |
Q |
| |
|
|||||||||| |||||||||| ||| ||||| |||||||||| |||| || ||| |||||||||||| |||| | | | |||| |||||| |||||| | |
|
|
| T |
41519327 |
gtttccttcaattcgccatttttaatctcaattccagccaaagcattcttttcaacctccaatacaccaaccatgcttcgaagctcatcaagagcattac |
41519426 |
T |
|
| Q |
214 |
tatcatctaacca |
226 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41519427 |
tatcatctaacca |
41519439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 229
Target Start/End: Original strand, 41503897 - 41504074
Alignment:
| Q |
52 |
catcagccaacttactcttttctttccccaacctatttatagtttccaaaattttcttcaccgtttccttcacttcgccatttctaacctcaactccagc |
151 |
Q |
| |
|
|||||||||| || || |||||||||| |||| |||||||| ||||| ||| |||| ||| |||||| ||||| |||| || || || | |||| |
|
|
| T |
41503897 |
catcagccaatttgctgttttctttcctcaactcgcttatagttgccaaatacttcgtcacagttgccttcaattcgctatttttactcttaatttcagc |
41503996 |
T |
|
| Q |
152 |
caaaacatttttatcaccctccaatacacgaaccttattcctaagcgcatcaaaagcattgctatcatctaaccattt |
229 |
Q |
| |
|
|||| ||||||| ||| |||||||||||| |||||| | |||| |||||| |||||| |||||||| |||||||| |
|
|
| T |
41503997 |
caaatcatttttttcatcctccaatacaccaaccttcctttgaagctcatcaagagcatttctatcatcaaaccattt |
41504074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 396
Target Start/End: Complemental strand, 41702966 - 41702837
Alignment:
| Q |
267 |
aatttaccaatcatttttctcaacacaccaagttcattattatcctccatcctcttttcattcaacttcctcaactccaaaatcttagcctctagctcac |
366 |
Q |
| |
|
|||| ||||||||||||||| |||||||| | |||| ||| ||| ||| || |||| || |||||| |||||||||||| | | ||||| ||| |
|
|
| T |
41702966 |
aattcaccaatcatttttcttaacacacccaattcaatatcatcttcctcccattttttctttaacttcttcaactccaaaacttcattctctaattcaa |
41702867 |
T |
|
| Q |
367 |
cattctttcttcttaacacatcaatttcat |
396 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |
|
|
| T |
41702866 |
caatctttcttcttaacacatcaacttcat |
41702837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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