View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_21 (Length: 441)
Name: NF13119_high_21
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 13627781 - 13627368
Alignment:
| Q |
18 |
tctttttatcacaagacatccacaagatcgctatcaatttgcaattggactatcagatgggtctgttacaattatggagcccaaaaagtatgaagcatgg |
117 |
Q |
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| T |
13627781 |
tctttttatcacaagacatccacaagatcgctatcaatttgcaattggactatcagatggatctgttacaattatggagcccaaaaagtatgaagcatgg |
13627682 |
T |
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| Q |
118 |
tggtggtaaaaaagtgtgtgttgttaaaatggatatggtgtgataattcatttgcatcattttagnnnnnnnnnncaattattgagttgttaaacagttg |
217 |
Q |
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| T |
13627681 |
tggtggtaaaaaagtgtttgttgttaaaatggatatggtgtgataattcatttgcatcattttagttttttctttcaattattgagttgttaaacagttg |
13627582 |
T |
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| Q |
218 |
ttcaactttatggttggatannnnnnnattgtgagacaatgtttggatgctgttgaagatgttttggtcaagtaatctttatgcttaagtatggtatata |
317 |
Q |
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| T |
13627581 |
ttcaactttatggttggatgtttttttattgtgagacaatgtttggatgctcatgaagatgttttggtcaagtaatctttatgcttaagtatggtatata |
13627482 |
T |
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| Q |
318 |
aatacattatgtttgcatgaattattttatatattaaatgtgatatatttgaagtactattctagtctaaattttgatcttctgatttttgaagtggctt |
417 |
Q |
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| T |
13627481 |
aatacattatatttgcatgaattattttatatattaaatgtgatagatttgaagtactattctagtctaaattttgatcttctgatttttgaagtggctt |
13627382 |
T |
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| Q |
418 |
aacttaaacctttg |
431 |
Q |
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| T |
13627381 |
aacttaaacctttg |
13627368 |
T |
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