View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_high_24 (Length: 411)

Name: NF13119_high_24
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_high_24
NF13119_high_24
[»] chr7 (4 HSPs)
chr7 (149-379)||(10954659-10954889)
chr7 (9-78)||(10954519-10954588)
chr7 (182-252)||(41100357-41100427)
chr7 (27-66)||(44936013-44936052)
[»] chr3 (1 HSPs)
chr3 (182-237)||(245676-245731)
[»] chr8 (3 HSPs)
chr8 (14-66)||(5961213-5961265)
chr8 (27-66)||(23680636-23680675)
chr8 (187-237)||(14015929-14015979)
[»] chr4 (3 HSPs)
chr4 (9-68)||(8180306-8180365)
chr4 (9-66)||(8179738-8179795)
chr4 (182-218)||(49370230-49370266)
[»] chr5 (1 HSPs)
chr5 (182-266)||(42273398-42273480)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 149 - 379
Target Start/End: Original strand, 10954659 - 10954889
Alignment:
Q  149 cgaaatgagagggggattttgatttagatttggtaaattaaacaagctataaaatatttttaaaaatgaacgaaatatgattgaattgtcgtataatcat 248  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10954659 cgaaatgagagggggattttgttttagatttggtaaattaaacaaactataaaatatttttaaaaatgaacgaaatatgattgaattgtcgtataatcat 10954758  T
Q  249 atatattatggtattctttaaaattatttctaaaaatgaatgaagctttgcatggcagcattcagaaactaaaaattgcattggattcacaccttttatg 348  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10954759 atatattatggtattctttaaaattatttctaaaaatgattgaagctttgcatggcagcattcagaaactaaaaattgcattggattcacacctttaatg 10954858  T
Q  349 cttctcctccaattttatggttttaattttc 379  Q
    |||||||||||||||||||||||||||||||    
T  10954859 cttctcctccaattttatggttttaattttc 10954889  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 10954519 - 10954588
Alignment:
Q  9 gacatcatcattggatacatacacattagatcataatgaaacactcacgagaatgaatgaattctctaac 78  Q
    |||| |||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||||||| ||||    
T  10954519 gacaacatcattgtataaatacatatcagagcataatgaaacactcacgagaatgaatgaattctttaac 10954588  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 41100427 - 41100357
Alignment:
Q  182 taaattaaacaagctataaaatatttttaaaaatgaacgaaatatgattgaattgtcgtataatcatatat 252  Q
    |||||||| ||||||||||||| ||| |||||||||| ||| | ||||||||||||  ||| |||||||||    
T  41100427 taaattaagcaagctataaaatgtttctaaaaatgaatgaagtgtgattgaattgttctatgatcatatat 41100357  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 44936052 - 44936013
Alignment:
Q  27 atacacattagatcataatgaaacactcacgagaatgaat 66  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  44936052 atacacattagagcataatgaaacactcatgagaatgaat 44936013  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 245676 - 245731
Alignment:
Q  182 taaattaaacaagctataaaatatttttaaaaatgaacgaaatatgattgaattgt 237  Q
    |||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||    
T  245676 taaattaagcaagctataaaatatttttaaaaatgaatgaagtgtgattgaattgt 245731  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 5961265 - 5961213
Alignment:
Q  14 catcattggatacatacacattagatcataatgaaacactcacgagaatgaat 66  Q
    |||||||  ||| |||||||||||| |||||||||||||||||||||||||||    
T  5961265 catcattatataaatacacattagaacataatgaaacactcacgagaatgaat 5961213  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 23680636 - 23680675
Alignment:
Q  27 atacacattagatcataatgaaacactcacgagaatgaat 66  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  23680636 atacacattagagcataatgaaacactcacaagaatgaat 23680675  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 14015979 - 14015929
Alignment:
Q  187 taaacaagctataaaatatttttaaaaatgaacgaaatatgattgaattgt 237  Q
    |||| |||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  14015979 taaataagctataaaatgtttctaaaaatgaatgaagtatgattgaattgt 14015929  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 8180365 - 8180306
Alignment:
Q  9 gacatcatcattggatacatacacattagatcataatgaaacactcacgagaatgaatga 68  Q
    |||| |||||||| ||| |||||||||||| |||||||||||| ||| ||||||||||||    
T  8180365 gacaacatcattgtataaatacacattagagcataatgaaacaatcaagagaatgaatga 8180306  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 8179795 - 8179738
Alignment:
Q  9 gacatcatcattggatacatacacattagatcataatgaaacactcacgagaatgaat 66  Q
    |||| |||||||| ||| |||||||||||| |||||| ||||| ||| ||||||||||    
T  8179795 gacaacatcattgtataaatacacattagagcataataaaacaatcaagagaatgaat 8179738  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 49370230 - 49370266
Alignment:
Q  182 taaattaaacaagctataaaatatttttaaaaatgaa 218  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  49370230 taaattaagcaagctataaaatatttctaaaaatgaa 49370266  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 42273398 - 42273480
Alignment:
Q  182 taaattaaacaagctataaaatatttttaaaaatgaacgaaatatgattgaattgtcgtataatcatatatattatggtattctt 266  Q
    |||||||| ||||||| ||||| ||| |||||||||| ||| | ||||||||||||  ||| |||  ||||||||||||||||||    
T  42273398 taaattaagcaagctacaaaatgtttctaaaaatgaatgaagtgtgattgaattgttatatgatc--atatattatggtattctt 42273480  T

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