View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_high_26 (Length: 405)
Name: NF13119_high_26
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_26 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 30 - 352
Target Start/End: Complemental strand, 30968260 - 30967957
Alignment:
| Q |
30 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30968260 |
cagttttcagactctggctttttcagtaatagagaagatcctgctacttatgaggaagctgcaaagttcaattgttggaaagaggctatggatcaggaaa |
30968161 |
T |
|
| Q |
130 |
ttgaagccatagaaagaaatgatacatgggaactaactgatttaccaactggaagcaggaagattagtgtaaaatggatttataagacaa--tacaatga |
227 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30968160 |
ttgaagccatagaaagaaatgatac--------------------caactggaagcaggaagattagtgtaaaatggatttataagacaaaatacaatga |
30968081 |
T |
|
| Q |
228 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagttttttgctcctgtagccag |
327 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
30968080 |
aaatggtaaagttgaaaaacacaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagt-ttttgctcctgtaaccag |
30967982 |
T |
|
| Q |
328 |
atgggacactattagaactatactt |
352 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
30967981 |
atgggacactaatagaactatactt |
30967957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 348
Target Start/End: Original strand, 608466 - 608565
Alignment:
| Q |
248 |
acaaagccagattagtagcaaaggggtactctcaaaagtatggagttgattacaatgaagttttttgctcctgtagccagatgggacactattagaacta |
347 |
Q |
| |
|
||||||||||| ||||||| || || |||||||| ||||||| || | || |||||||| ||| ||||| || || |||||||||||||| ||||||| |
|
|
| T |
608466 |
acaaagccagactagtagctaaaggctactctcagcagtatggtattaactataatgaagtgttt-gctccagttgcaagatgggacactataagaacta |
608564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University