View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_3 (Length: 734)
Name: NF13119_high_3
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 593; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 717
Target Start/End: Original strand, 49675742 - 49676449
Alignment:
| Q |
8 |
gagcagagataaggatgagataaacttggcaaatttagccgtacggaagattcaaaaaagtaaaatccatgagcttgtggatccttcccttggctttgag |
107 |
Q |
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| T |
49675742 |
gagcagagataaggatgagataaacttggcaaatttagccatacggaagattcaaaaaagtaaaatccatgagcttgtggatccttcccttggctttgag |
49675841 |
T |
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| Q |
108 |
tcagataaggatgttaaaaggaaaatagtttcgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttt |
207 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49675842 |
tcagataaggatgttaaaaggaaaatagttttgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttt |
49675941 |
T |
|
| Q |
208 |
tggacgtgctgaggagaattgatagtgttagtgggagggatgagtttggaaatgtagaggaagtaatagctcgtggagcagtgatgtcgagtattaacgt |
307 |
Q |
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| T |
49675942 |
tggacgtgctgaggagaattgatagtgttagtgggagggatgagtttggaaatgtagaggaagtaatagctcgtggagcagtgatgtcgagtattaacgt |
49676041 |
T |
|
| Q |
308 |
acgttcactgtcatcgtcttcacccgatcacgttgagatgaaattgttgaagaataaaaaattaacgcctactcctacgggtgtgacagataaatgggat |
407 |
Q |
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| T |
49676042 |
atgttcactgtcatcgtcctcacccgatcacgttgagatgaaattgttgaagaataaaaagttaacg---tctcctacgggtgtgacggataaatgggat |
49676138 |
T |
|
| Q |
408 |
agtgaatcgactacttctaatgtcagcggtcagtcagcaagccgggtttaatataacacttgtagatgaaaagtaatatggtcaattagcatatttcctt |
507 |
Q |
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| T |
49676139 |
agtgaatcgactacttctaatgtcagcggtcagtcagcaagccggatttaatataacacttgtagaggaaatgtaatctggtcaattagcatatttcctt |
49676238 |
T |
|
| Q |
508 |
tattgtgttttcttttctccaattgcataatttgaattcgttactatatatatatttagccagagcagaattgcacctatatactacattatttgatact |
607 |
Q |
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| T |
49676239 |
tattgtgttttcttttctcccattgcataatttgaattcgttactata-atataattagctagagcagaattgcacctatatactacattatttgatact |
49676337 |
T |
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| Q |
608 |
tctctatgttcattctcttgtaagtaattgggttatgatgatttatg-nnnnnnntaagaaaattcagggtaatcatatagtattatttatacttt-aga |
705 |
Q |
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| T |
49676338 |
tctctatgttcattctcttgtaagtaattgggttatgatgatttatgaaaaaaaataagaaaattcagtgtaatcatatagtattatttatactttaaga |
49676437 |
T |
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| Q |
706 |
gtttatcttatt |
717 |
Q |
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|||||||||||| |
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| T |
49676438 |
gtttatcttatt |
49676449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 163 - 439
Target Start/End: Original strand, 49683928 - 49684201
Alignment:
| Q |
163 |
gtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgatagtgttagtgggagggatgagtttggaaatgt |
262 |
Q |
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||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| |||| | |||| |||||| ||||||||||| ||||||||| ||| |
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| T |
49683928 |
gtttgcaacgggacaaggaattgaggccttcaatggatgaggttttggaggtgttgagaaaaatttatagtggcagtgggagggaagagtttggacatga |
49684027 |
T |
|
| Q |
263 |
agaggaagtaatagctcgtggagcagtgatgtcgagtattaacgtacgttcactgtcatcgtcttcacccgatcacgttgagatgaaattgttgaagaat |
362 |
Q |
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||| |||||||||| ||||||||||| ||| || ||||||| ||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
49684028 |
agatgaagtaataggtcgtggagcagggatatcacgtattaatgtacgttcactgtcactgtcttcactcgaccacgttgagatgaaattgttgaagaat |
49684127 |
T |
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| Q |
363 |
aaaaaattaacgcctactcctacgggtgtgacagataaatgggatagtgaatcgactacttctaatgtcagcggtca |
439 |
Q |
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| T |
49684128 |
aagaagttaacac---ctcctacagctatgacagataaatcgtatagtgaatcgactgcttctaatgtcagtggtca |
49684201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 559 - 636
Target Start/End: Original strand, 49688976 - 49689052
Alignment:
| Q |
559 |
atatttagccagagcagaattgcacctatatactacattatttgatacttctctatgttcattctcttgtaagtaatt |
636 |
Q |
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||||||| ||| ||||||||||||||||||| ||||| || ||||||||| |||| |||||||||||| ||| ||||| |
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| T |
49688976 |
atatttaaccacagcagaattgcacctatattctacaata-ttgatacttatctacgttcattctcttataattaatt |
49689052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 49671667 - 49671769
Alignment:
| Q |
132 |
atagtttcgatagcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgata |
231 |
Q |
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| T |
49671667 |
atagtttcggtggcagagttagcttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaa |
49671766 |
T |
|
| Q |
232 |
gtg |
234 |
Q |
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||| |
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| T |
49671767 |
gtg |
49671769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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