View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_high_30 (Length: 365)
Name: NF13119_high_30
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_30 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 104 - 365
Target Start/End: Original strand, 44133575 - 44133833
Alignment:
| Q |
104 |
gctgaactttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
203 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133575 |
gctgaaatttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
44133674 |
T |
|
| Q |
204 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaaacatatatagtacattcttataaaattaagataaccct |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133675 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgtttattataattggtgcacaaaacatatatagtacattcttataaaattaagataaccct |
44133774 |
T |
|
| Q |
304 |
tgtcccttcttgatcattatttagtacttgtggtttgaaatatattgaattaagttcactcc |
365 |
Q |
| |
|
||| | |||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
44133775 |
tgt---tccttgatcactatttagtacttgtggtctgaaatatatttaattaagttcactcc |
44133833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 44133485 - 44133524
Alignment:
| Q |
14 |
agagagagacgttcctttttccaattaaataacgataatg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133485 |
agagagagacgttcctttttccaattaaataacgataatg |
44133524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 104 - 296
Target Start/End: Original strand, 50050442 - 50050634
Alignment:
| Q |
104 |
gctgaactttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatgcacagtgtccactttgattttgcggctagtgc |
203 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50050442 |
gctgaaatttgtaataaacaatgaaaaaagacaccaaatttgattttctatctttggcttgaggcatttacagtgtccactttgattttgcggctagtgc |
50050541 |
T |
|
| Q |
204 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaaacatatatagtacattcttataaaattaaga |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50050542 |
agaatcgtagtatgtcattttctagtccgtgacaaaatcgttcattataattggtgcacaaaacatatatagtacattcttataaaattaaga |
50050634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 50050357 - 50050396
Alignment:
| Q |
14 |
agagagagacgttcctttttccaattaaataacgataatg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50050357 |
agagagagacgttcctttttccaattaaataacgataatg |
50050396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 50050821 - 50050892
Alignment:
| Q |
291 |
ttaagataacccttgtcccttcttgatcattatttagtacttgtggtttgaaatatattgaattaagttcactcc |
365 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||| ||||| |||| |||| |
|
|
| T |
50050821 |
ttaagataacccttgtccttt---gatcactatttagtacttgtggtctgaaatatatttaattacgttccctcc |
50050892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University