View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_34 (Length: 336)
Name: NF13119_high_34
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 319
Target Start/End: Complemental strand, 39001310 - 39001019
Alignment:
| Q |
18 |
taatctaaaaggccataagcatggtttagaaagaataagaaaagggaataaaattgaataaataacatatgtttaatatacgaactttatgactgcattt |
117 |
Q |
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| T |
39001310 |
taatctaaaaggccataagcatggtttagaaagaataagaaaagggcataaa----------taacatatgtttaatatatgaactttatgactgcattt |
39001221 |
T |
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| Q |
118 |
tgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtggaaccagaa |
217 |
Q |
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| T |
39001220 |
tgataaataaaaacacacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtggaaccagaa |
39001121 |
T |
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| Q |
218 |
ccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcactttgataatagtat |
317 |
Q |
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| T |
39001120 |
ccaatgttaataatagctccttttttgttcttaatcatactaggaagcacagctttagtaatccaagttgttccttcaacattcactttgataatagtat |
39001021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 111 - 319
Target Start/End: Complemental strand, 38996596 - 38996388
Alignment:
| Q |
111 |
tgcattttgataaataaaaaca-cacatttatagagcttgcttacgcttttgaagctgcataaagtgtgacaagaggatatgaaggaatcacaacagtgg |
209 |
Q |
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|||||||||||||||||||| | || |||||||||| | ||||||||||||| |||||||||| ||||||||||||| | ||||||| |||||| ||| |
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| T |
38996596 |
tgcattttgataaataaaaagaacaaatttatagagata-cttacgcttttgatgctgcataaattgtgacaagaggaaaagaaggaagtacaacactgg |
38996498 |
T |
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| Q |
210 |
aaccagaaccaatgttaataatagctccttttttgttgttaatcatactaggaagcacagcttttgtgatccaagttgttccttcaacattcactttgat |
309 |
Q |
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|||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38996497 |
aaccagaaccaatgttaataatagctccttttctcttcttaatcatactaggaagcacagcttttgtaatccaagttgttccttcaacattcactttgat |
38996398 |
T |
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| Q |
310 |
aatagtatcc |
319 |
Q |
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||||| |||| |
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| T |
38996397 |
aatagcatcc |
38996388 |
T |
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