View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_36 (Length: 330)
Name: NF13119_high_36
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 29121727 - 29122050
Alignment:
| Q |
1 |
cggacatgctagtgtccgtctttccagtagtccatataaggttagtaaaatgtaaattaatttatagcnnnnnnnnn---tgcaaattggttgacaaaat |
97 |
Q |
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| T |
29121727 |
cggacatactagtgtccgtctttccagttgtccatataaggttagtaaaatgtaaattaatttataggaaaaaaagaaaatgcaaattggttgacaaaat |
29121826 |
T |
|
| Q |
98 |
attaacctgtgtaaaacttaataagaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaa |
197 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29121827 |
attaacctgtgtaaaacttaataagaaaccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaa |
29121926 |
T |
|
| Q |
198 |
tcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctggtgatgacatat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29121927 |
tcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatctactctgcttcgatgcatctggtgatgacatat |
29122026 |
T |
|
| Q |
298 |
tgttatctgttattgaatctgtgc |
321 |
Q |
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| T |
29122027 |
tgttatctgttattgaatctgtgc |
29122050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 6732356 - 6732541
Alignment:
| Q |
102 |
acctgtgtaaaacttaataa--gaagccaagattgccttccaatatttgattcctatcattctggtcctttataacttgctccatttcttccatcaaatc |
199 |
Q |
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| T |
6732356 |
acctatgtaaaacttaataaaagaagccaaaattgccttccaatatttgattcttgtgactcttgtcatttacaacttgctccatttcttccatcaagtc |
6732455 |
T |
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| Q |
200 |
atgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatgcatctg |
285 |
Q |
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| T |
6732456 |
atgaaagtttatattcctttcacctttctcaaggtacttgtcaaagcacctattcatttgatatctgctctgtttcgatacatctg |
6732541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 261
Target Start/End: Complemental strand, 6528844 - 6528766
Alignment:
| Q |
183 |
atttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggt |
261 |
Q |
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| T |
6528844 |
atttcttccatcaagtcatgaagttttatggttcttctacctctctaaaggaactttgcaaagcacttcttcgtatggt |
6528766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 283
Target Start/End: Complemental strand, 32773610 - 32773507
Alignment:
| Q |
180 |
tccatttcttccatcaaatcatgaacttttatgatccttctacctttctcaaggtacttggcaaaacacctcttcatatggtatcgactctgcttcgatg |
279 |
Q |
| |
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|||| ||||||||| || ||||||| ||| ||||| ||||| ||||| || |||||||| ||||| ||| ||||||||||||||| ||||| | || ||| |
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| T |
32773610 |
tccacttcttccattaattcatgaagtttcatgattcttctccctttttctaggtacttagcaaagcacttcttcatatggtatctactcttcctcaatg |
32773511 |
T |
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| Q |
280 |
catc |
283 |
Q |
| |
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|||| |
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| T |
32773510 |
catc |
32773507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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