View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_high_37 (Length: 324)

Name: NF13119_high_37
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_high_37
NF13119_high_37
[»] chr5 (1 HSPs)
chr5 (13-306)||(42424024-42424314)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 42424314 - 42424024
Alignment:
Q  13 aatatgtactgatttaaattatttacgcataaaatcgaataatgatcaagttgacatnnnnnnnnnncgattaagttgaacaatggaaaataaaatagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  42424314 aatatgtactgatttaaattatttacgcataaaatcgaataatgatcaagttgacataaaaaaaa--cgattaagttgaacaatggaaaataaaatagaa 42424217  T
Q  113 gatagaaacactttcatatgatcaattcaaaa-atcacaaccacaattcacaccagaaaaaacaaaacctaagtttaaattcaataatattaggtttaat 211  Q
    |||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42424216 gatagaaacactttcat--gatcaattcaaaacatcacaaccacaattcacaccagaaaaaacaaaacctaagtttaaattcaataatattaggtttaat 42424119  T
Q  212 ttctaaggtaaacattaaagcccacgattctttttcattcatcagattcaacttcgtcgcccttaaaagtccaactattcctttgacgaacttca 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  42424118 ttctaaggtaaacattaaagctcacgattctttttcattcatcaggttcgacttcgtcgcctttaaaagtccaactattcctttgacgaacttca 42424024  T

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