View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_40 (Length: 304)
Name: NF13119_high_40
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 14812604 - 14812310
Alignment:
| Q |
1 |
ttattcttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgg |
100 |
Q |
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| T |
14812604 |
ttattcttgacaaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttccaaagaggcttttgtttgg |
14812505 |
T |
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| Q |
101 |
gaaaacaatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataatggttatggatatg |
198 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14812504 |
gaaaacaatatctgaagatatagagagaagtctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatata |
14812405 |
T |
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| Q |
199 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
293 |
Q |
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| T |
14812404 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctaagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
14812310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 15259599 - 15259305
Alignment:
| Q |
1 |
ttattcttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgg |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
15259599 |
ttattcttgacaaggtgatgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttacaaagaggcttttgtttgg |
15259500 |
T |
|
| Q |
101 |
gaaaacaatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataatggttatggatatg |
198 |
Q |
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| T |
15259499 |
aaaaacaatatctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatata |
15259400 |
T |
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| Q |
199 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
15259399 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctaagcaaggagatgatccaaaactaaattttcaggttctgaccacaggttc |
15259305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 14805009 - 14804890
Alignment:
| Q |
174 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
273 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||| | || |
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| T |
14805009 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
14804910 |
T |
|
| Q |
274 |
caggttctgaccacaggttc |
293 |
Q |
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| T |
14804909 |
cacgttttgaccacaggttc |
14804890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 174 - 293
Target Start/End: Complemental strand, 15252003 - 15251884
Alignment:
| Q |
174 |
attagagataatggttatggatatgaaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaattttt |
273 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||| | |||||||| ||||||| | || |
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| T |
15252003 |
attagagacaatggttgctgatacgaaaacctcaaaagaaacgttacaagggttttatagaagccacgctgagctaagtgatgatcctaaactaagtgtt |
15251904 |
T |
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| Q |
274 |
caggttctgaccacaggttc |
293 |
Q |
| |
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|| ||| ||||||||||||| |
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| T |
15251903 |
cacgttttgaccacaggttc |
15251884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 17521576 - 17521870
Alignment:
| Q |
1 |
ttattcttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaatgcaccttgcaaagaggcttttgtttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17521576 |
ttattcttgacaaggtggtgatgtttatcaaattgttgcatgataaagatttgttccataagtactataaaaagcaccttgcaaagaggcttttgtttgg |
17521675 |
T |
|
| Q |
101 |
gaaaacaatatctgaagatatatagagaagtctcgctgttaaactc--aagaatatgtggatacaaatttgcactattagagataatggttatggatatg |
198 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17521676 |
caaaacaatatctgaagatatagagagaaatctcgctgttaaactcaaaagagtatgtggttacaaatttgcactattagagataatggttatggatata |
17521775 |
T |
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| Q |
199 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagctaggcgatgatccaaaactaatttttcaggttctgaccacaggttc |
293 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17521776 |
aaaacctcaaaagaaatgttacaaggcttttatagaagccacgctgagcgaggtgatgatccaaaactaagttttcaggttctgaccacaggttc |
17521870 |
T |
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