View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_high_43 (Length: 269)

Name: NF13119_high_43
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_high_43
NF13119_high_43
[»] chr1 (2 HSPs)
chr1 (80-269)||(49164325-49164514)
chr1 (150-204)||(12874077-12874131)
[»] chr8 (1 HSPs)
chr8 (80-267)||(43750793-43750980)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 49164514 - 49164325
Alignment:
Q  80 tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca 179  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49164514 tagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca 49164415  T
Q  180 attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaatt 269  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49164414 attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaatt 49164325  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
Q  150 gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag 204  Q
    ||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||    
T  12874131 gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag 12874077  T

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Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 43750980 - 43750793
Alignment:
Q  80 tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca 179  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||| ||||  |||||| ||    
T  43750980 tagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgcca 43750881  T
Q  180 attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaa 267  Q
    |||||| |||||||| ||||||||  ||||||||||||||||||||||||| |||||||| | | |||||  ||||||||| ||||||    
T  43750880 attctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaa 43750793  T

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