View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_45 (Length: 264)
Name: NF13119_high_45
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_45 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 49164001 - 49164256
Alignment:
| Q |
9 |
tatgcatgctaacataaatttcaatgtactgcagagaattccaaatgctttcaccgagaaatatatcggtgatttatcaaagccaatgtttctcaagact |
108 |
Q |
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| T |
49164001 |
tatgcatgctaacataaatttcaatgtactgcagagaattccaaatgctttcactgagaaatatatcggtgatttatcaaagccaatgtttctcaagact |
49164100 |
T |
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| Q |
109 |
cccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcattagatc |
208 |
Q |
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| T |
49164101 |
cccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcattagatc |
49164200 |
T |
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| Q |
209 |
atggtcacatggtgctgtttcaatatcagaaaacttctcattttgaggtttacatt |
264 |
Q |
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| T |
49164201 |
atggtcacatggtgctgtttcaatatcagaaaacctctcattttgaggtttacatt |
49164256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 12873747 - 12873886
Alignment:
| Q |
95 |
tgtttctcaagactcccgatgtcaaagaatgggaaatacatttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacaca |
194 |
Q |
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| T |
12873747 |
tgtttctcaagactccagatggcaaaaaatgggaaatgtgcacgactaaaatcaatggggatatttggtttcaaaagggttggaaagaatttgctacata |
12873846 |
T |
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| Q |
195 |
ttattcattagatcatggtcacatggtgctgtttcaatat |
234 |
Q |
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| T |
12873847 |
ttattcactagatcatgggcacatggtattatttcaatat |
12873886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 12880793 - 12880883
Alignment:
| Q |
173 |
gttggaaggaatttgctacacattattcattagatcatggtcacatggtgctgtttcaatatcagaaaacttctcattttgaggtttacat |
263 |
Q |
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| T |
12880793 |
gttggaaggaatttgctacacgttattcattagaccatggacacatgacggtgtttcaatataaaaaaatatcacattttgaggtttacat |
12880883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 36 - 263
Target Start/End: Original strand, 43750494 - 43750721
Alignment:
| Q |
36 |
actgcagagaattccaaatgctttcaccgagaaatatatcggtgatttatcaaagccaatgtttctcaagactcccgatgtcaaagaatgggaaatacat |
135 |
Q |
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| T |
43750494 |
actgcagaaaattccagatgctttcactaagaaatatagtggtgatttgtcaaacccaatgtttctcaagactccagatgacaaaaaatgggaagtacat |
43750593 |
T |
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| Q |
136 |
ttgactaaaaaggatggtgatatttggattcaaaggggttggaaggaatttgctacacattattcattagatcatggtcacatggtgctgtttcaatatc |
235 |
Q |
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| T |
43750594 |
ttgactaaaaaggatggtgatatttggattcacaagggatggaatgaatttgctacacattattctatagatcatggacacatgctgatgtttcaatatg |
43750693 |
T |
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| Q |
236 |
agaaaacttctcattttgaggtttacat |
263 |
Q |
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| T |
43750694 |
aaaaaacatctcattttaagatttacat |
43750721 |
T |
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