View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_56 (Length: 242)
Name: NF13119_high_56
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_56 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 2249313 - 2249540
Alignment:
| Q |
15 |
atgttgaagtgaagagagaaaaagaagtgttttttggaaggaaatggaattcattagatattggaacttttgttattgttttgtcaatgcatttgctttg |
114 |
Q |
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| T |
2249313 |
atgttgaagtgaagagagaaaaagaagtgttttttggaaggaaatggaattcattagatattggaacttttgttattgttttgtcaatgcatttgctttg |
2249412 |
T |
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| Q |
115 |
tttatttgctccattcaatttcaattggccagctttttgggtttctgtggcactttatgttgttactggattgtttggaataacaacttctttccataga |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2249413 |
tttatttgctccattcaatttcaattggccagctttttgggtttctgtggcactttatgttgttactggattgtttggaataacaacttctttccataga |
2249512 |
T |
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| Q |
215 |
aatctttctcatagaagttttaagcttc |
242 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2249513 |
aatctttctcatagaagttttaagcttc |
2249540 |
T |
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