View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_high_6 (Length: 666)
Name: NF13119_high_6
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 584; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 619
Target Start/End: Original strand, 46921333 - 46921945
Alignment:
| Q |
1 |
cactagaattctatttcatttcacgtgcaaatcactgtccaaattgtgtcttcacctaaactgaaaaaagccctttttataagctcaaaatcactcttga |
100 |
Q |
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| T |
46921333 |
cactagaattctatttcatttcacgtgcaaatcactgtccaaattgtgtcttcacctaaactgaaaaaagccctttttataagctcaaaatcactcttga |
46921432 |
T |
|
| Q |
101 |
agtaaacgcaacttggcttttatcatcttcatcttcctctttcagagcctctacattcacatgtgtttaccagaggaaaatagagaaagagagagatcca |
200 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46921433 |
agaaaacgcaaattggcttttatcatcttcatcttcctctttcagagcctctacattcacatgtgtttaccagaggaaaatagagaaagagagagatcca |
46921532 |
T |
|
| Q |
201 |
tggcgctagaaccaactctactatatccacaagaccctttcacctatggattcaacaaagaccactacaattacaaccttttaacagattctgaagcaaa |
300 |
Q |
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| T |
46921533 |
tggcgctagaaccaactctactatatccacaagaccctttcacctatggattcaacaaagaccactacaattacaaccttttaacagattctgaagcaaa |
46921632 |
T |
|
| Q |
301 |
ctttgactacaccaatttcaaccttcaaaatgaagaacaaggttttgtttctacttttctcaagaaccaacaaacagagaattatccttatgaaaattgg |
400 |
Q |
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| T |
46921633 |
ctttgactacaccaatttcaaccttcaaaatgaagaacaaggttttgtttctacttttctcaagaaccaacaaacagagaattatccttatgaaaattgg |
46921732 |
T |
|
| Q |
401 |
agtaacaattgtccatctttagatagttcaatttcaactcgttctcgttctcgttccaagaaacgcagagtcaaaacaagtaagaataaggaagaaattg |
500 |
Q |
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| T |
46921733 |
agtaacaattgtccatctttagatagttcaatttcaa------ctcgttctcgttccaagaaacgcagagtcaaaacaagtaagaataaggaagaaattg |
46921826 |
T |
|
| Q |
501 |
agaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctgaatcctactt |
600 |
Q |
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| T |
46921827 |
agaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctgaatcctacgt |
46921926 |
T |
|
| Q |
601 |
ccaaagggtacttctatag |
619 |
Q |
| |
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||||||||||||||||||| |
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| T |
46921927 |
ccaaagggtacttctatag |
46921945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 627 - 666
Target Start/End: Original strand, 46921971 - 46922010
Alignment:
| Q |
627 |
gaaaaatatttagttttaaattgcggttaggatcacattt |
666 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||| |
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| T |
46921971 |
gaaaaatatttagttttaaattgctgttaggatcacattt |
46922010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 613
Target Start/End: Complemental strand, 36676508 - 36676386
Alignment:
| Q |
491 |
gaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatctctcatgcctg |
590 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| || || || || |||||||| |||||||||||||| ||| ||||| | ||||| ||||| | |
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| T |
36676508 |
gaagaaattgagaatcagagaatgactcacattgctgttgagcgtaatagaagaaagcagatgaatgagtatctttctattcttcgctctctaatgccag |
36676409 |
T |
|
| Q |
591 |
aatcctacttccaaagggtactt |
613 |
Q |
| |
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| || || |||||||||||||| |
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| T |
36676408 |
attctcacatccaaagggtactt |
36676386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 588
Target Start/End: Complemental strand, 8873402 - 8873295
Alignment:
| Q |
481 |
taagaataaggaagaaattgagaatcagagaatgactcacattgctgtagaacgcaacaggagaaagcaaatgaatgagtatctctctgttcttagatct |
580 |
Q |
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||||||||||||||| |||||||||| |||||||| ||||||||||| ||||| || |||||| ||||||||||| ||||| ||||||||| ||| |
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| T |
8873402 |
taagaataaggaagatgttgagaatcaaagaatgacacacattgctgttgaacgtaataggagacgccaaatgaatgatcatctcagtgttcttaggtct |
8873303 |
T |
|
| Q |
581 |
ctcatgcc |
588 |
Q |
| |
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|||||||| |
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| T |
8873302 |
ctcatgcc |
8873295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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