View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_high_65 (Length: 217)
Name: NF13119_high_65
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_high_65 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 36903326 - 36903530
Alignment:
| Q |
1 |
atttctgtctcgacaggttcgttcgttactctcacttcttcaaccatttctgctaaatcatcaaggaaaaataaaacataacctaattgttaaatttttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36903326 |
atttctgtctcgacaggttcgttcgttactctcacttcttcaaccatttctgctaaatcatcaaggaaaaataaaacataacctaattgttaaatttttt |
36903425 |
T |
|
| Q |
101 |
aaaatcagggatgggagattgaatgcgatatcagaaatcgtagatgaattcaacgcgttggaacagaagatagttgatattgaagataataagattgcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||| |
|
|
| T |
36903426 |
aaaatcagggatgggagattgaatgcgatatcagaaatcgtagacgaattcaacgcgttggaacagaagatagttgagattgaagagaataatattacac |
36903525 |
T |
|
| Q |
201 |
aggtt |
205 |
Q |
| |
|
||||| |
|
|
| T |
36903526 |
aggtt |
36903530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 17479601 - 17479536
Alignment:
| Q |
140 |
gtagatgaattcaacgcgttggaacagaagatagttgatattgaagataataagattgcacaggtt |
205 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||| | || ||||||||| | |||||| |
|
|
| T |
17479601 |
gtagatgaattcaacgccttggaacagaagatagtggagattaaggagaataagattacgcaggtt |
17479536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University