View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_1 (Length: 774)
Name: NF13119_low_1
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 444 - 644
Target Start/End: Original strand, 42078812 - 42079012
Alignment:
| Q |
444 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
543 |
Q |
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| T |
42078812 |
ttccgaagctttgatgtagatattatctggtataggaaatagaagtcgtgtgagacactaatatctacaaacttcattaaccatttaacctttatacatc |
42078911 |
T |
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| Q |
544 |
tgaactataatttttgaaaagaataacatgttcacattgtttggaaaatgttttgtctcgaagcagctccaactgaaggtttggaaaatcctttaatcct |
643 |
Q |
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| T |
42078912 |
tgaactataatttttgaaaagaataacatgttcacatggtttggaaaatgttttgtctccaagcagctccaactgaaggtttggaaaatcctttaatcct |
42079011 |
T |
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| Q |
644 |
g |
644 |
Q |
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| T |
42079012 |
g |
42079012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 642 - 760
Target Start/End: Original strand, 42079042 - 42079160
Alignment:
| Q |
642 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccacattttcctctgtttgtgctgttgacttgactccaggaattagagttgtacctttg |
741 |
Q |
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| T |
42079042 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccaaattttcctctgcctttgctattgacttgactccaggaattagagttgtacctttg |
42079141 |
T |
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| Q |
742 |
catatgcaccaatttattg |
760 |
Q |
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| T |
42079142 |
catatgcaccaatttattg |
42079160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 642 - 760
Target Start/End: Original strand, 42081471 - 42081589
Alignment:
| Q |
642 |
ctgaagcagctggtctgatgaaagacgccaaccaagagcacccacattttcctctgtttgtgctgttgacttgactccaggaattagagttgtacctttg |
741 |
Q |
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| T |
42081471 |
ctgaagtagctcgtttgaggagagacgccaacccagagcacccaaattttcctctgcttgtgttattgacttgactccaggaattggaattgtacctttg |
42081570 |
T |
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| Q |
742 |
catatgcaccaatttattg |
760 |
Q |
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| T |
42081571 |
catatgcaccaatttattg |
42081589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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