View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_10 (Length: 592)
Name: NF13119_low_10
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 206 - 574
Target Start/End: Complemental strand, 1539776 - 1539412
Alignment:
| Q |
206 |
atcctaggtttgtgatatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
305 |
Q |
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| T |
1539776 |
atcctaggtttgtgacatgacagtgatgaataattgtttttgtttacagtgtctatcgcccctgttggtgctgctactcctggtatgtttccttatgcca |
1539677 |
T |
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| Q |
306 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
405 |
Q |
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| T |
1539676 |
tttacaaatcattggttttgatattctgtattgaattttgttccaaattaaaaatggagtcatatatgcttgattcatatgataaagaggatcttagctt |
1539577 |
T |
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| Q |
406 |
tacaacagtttttgcaagaatgagttaaaccgtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaattatagatacggt |
505 |
Q |
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| T |
1539576 |
tacaacagtttttgtaagaatgagttaaacggtaatataaaaatttaatatgatatcagattctatctattcagatcaaccaccaaattatagatacggt |
1539477 |
T |
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| Q |
506 |
atccaattttgctgtttttgagtcatatatatgttgttactccctattaacaatttaaatactcattct |
574 |
Q |
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| T |
1539476 |
atccaattttgctgtttttgagtc----atatgttgttactccctattaacaatttaaatactcattct |
1539412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 1539845 - 1539773
Alignment:
| Q |
11 |
cacagacacaatttagtgtaatcacatgtctcggcgtcagtccgtgtgtctgacaccaggacacttctaatcc |
83 |
Q |
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| T |
1539845 |
cacagacacaatttagtgtaatcacatgtctcggcgtcggtccgtgtgtctgacactgggacacttctaatcc |
1539773 |
T |
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