View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_11 (Length: 591)
Name: NF13119_low_11
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Complemental strand, 37969601 - 37969083
Alignment:
| Q |
1 |
gttcacgggcttctttgccannnnnnngggcaatgccttgctcgttcttgttacaacaaccttaaattgtgtcgaagcatctacaccatgttccatcaac |
100 |
Q |
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| T |
37969601 |
gttcacgggcatctttgccatttttttgggcaatgccttgctcgttcttgttacaacaaccttaaattgtgtcgaagcatctacactttgttccatcaac |
37969502 |
T |
|
| Q |
101 |
tttgtaaatttccccttagaaaccacagtatcgtcgaaaagcatagaagcctcagaatttacgtaaacgattcccaaccttttatttggattcttagcct |
200 |
Q |
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| T |
37969501 |
tttgtaaatttccccttagcaaccacagtatcgtcgaaaagcatagaagcctcagaatttacgtaaacgattcccaaccttttatttggattcttagcct |
37969402 |
T |
|
| Q |
201 |
tcaaataaatttcataatgtggtggcctagtgacgttttttacctcaaagtgggtaatagtaaatgtgggtccctctgggttgaaaacaaagaacaatgt |
300 |
Q |
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| T |
37969401 |
tcaaataaatttcataatgtggtggcctagtaacgttttttacctcaaagcgggtaatagtaaatgtgggtccctctgggttgaaaacaaagaacaatgt |
37969302 |
T |
|
| Q |
301 |
ggctaatgttattccaacaacggcaacgattgtaacaaggattaaaacaatggtgagcaagaatcgagggcaacaacaaccacgttgnnnnnnnnnnnnc |
400 |
Q |
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| T |
37969301 |
ggctaatgttattccaacaacagcaacgattgtaacaaggattaaaacaatggtgagcaagaatcgagggcaacaacaaccacgttgttttttctttttc |
37969202 |
T |
|
| Q |
401 |
ttatccttggtagtattacgataactttcaacgatgaatgcattttcacttggtggaacgcggtagacttgatcctttggaaattgaacgatgtacatat |
500 |
Q |
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| T |
37969201 |
ttatcattggtagtattgcgataactttcaacgatgaatgcattttcacttggtggaacgcggtagacttgatcctttggaaattgaacgatgtacatat |
37969102 |
T |
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| Q |
501 |
tgtcatggtgggcgcggcc |
519 |
Q |
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| T |
37969101 |
tgtcatggtgggcgcggcc |
37969083 |
T |
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