View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_12 (Length: 543)
Name: NF13119_low_12
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 12 - 524
Target Start/End: Original strand, 31980397 - 31980907
Alignment:
| Q |
12 |
agagaacgataacaagaaggaaaattgagaagagtacaataacgaagaaaagtgttctgcctttgatttctaggtctctatcatcaagctcagtgtagtg |
111 |
Q |
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| T |
31980397 |
agagaacgataacaagaaggaaaattgagaagagtacaataacgaagaaaagtgttctgcctttgatttctaggtctctatcatcaagctcagtgtagtg |
31980496 |
T |
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| Q |
112 |
ccagttcaatgatctggaattagggcttgacatgatgatgttgaaggtatgaaaaagaggtggttacttatgacggtggttaacggcggagcaaagctac |
211 |
Q |
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| T |
31980497 |
ccagttcaatgatctggaattagggcttgacatgatgatgttgaaggtatgaaaaagaggtggttacttatgacggtggttaacggcggagcaaagctac |
31980596 |
T |
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| Q |
212 |
aacgatggtgtagcattagaattagaataaataaatagtgttatgaacttatgatacgagactacg-tttttcttgatgatattttaactgaaattgtga |
310 |
Q |
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| T |
31980597 |
aacgatggtgtagcattagaattagaataaataaatagtgttatgaactt---atatgagactacgttttttcttgatgatattttaactgaaattgtga |
31980693 |
T |
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| Q |
311 |
agtgggaactagaaacgaatggataacgttatttatagtaagtttggttcattgtgcactcgcaattttggcgcgtgggcaatactaatataacnnnnnn |
410 |
Q |
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| T |
31980694 |
agtgggaactagaaacgaatggataacgttatttatagtaagtttggttcattgtgcactcgcaattttggcgcgtgggtaatactaatataactttttt |
31980793 |
T |
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| Q |
411 |
natgcataggactatatgagttttgaatatatcaaatttagaataaagtagagaaaataatttagtttagaagtgttataggagagtggtaaacatcaac |
510 |
Q |
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| T |
31980794 |
tatgcataggactatatgagttttgaatatatcaaatttagaataaagtagagaaaataatttagtttagaagtgttataggagagtggtaaacatcaac |
31980893 |
T |
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| Q |
511 |
ggtattgcatatgc |
524 |
Q |
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| T |
31980894 |
ggtattgcatatgc |
31980907 |
T |
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