View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_13 (Length: 541)
Name: NF13119_low_13
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 36903358 - 36903105
Alignment:
| Q |
5 |
gagagaaatgaacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaa |
104 |
Q |
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| T |
36903358 |
gagagtaacgaacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaa |
36903259 |
T |
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| Q |
105 |
tgtgtatttcttaggacattcaagtaagttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcg |
204 |
Q |
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| T |
36903258 |
tgtgtatttcttaggacattcaagtaagttaagcatttccttgatcttgttgtaaagcttgatagcatgaatagatccaacgtgaaggtcgggattctcg |
36903159 |
T |
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| Q |
205 |
agatgctctagtgcatcgaaatcaagctgtccgttgtcttcgctgtgagaaatt |
258 |
Q |
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| T |
36903158 |
agatgctctagtgcatcgaaatcaagctgtccgttgtcttcgctgtgagaaatt |
36903105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 325 - 523
Target Start/End: Complemental strand, 36903049 - 36902851
Alignment:
| Q |
325 |
gatagttactcgtggagaaaatcgaggtagttgaggatgcgagtgtagagatccaaaacgacgccggttctggggttggagatgtcgttgtctgtaacgg |
424 |
Q |
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| T |
36903049 |
gatagttactcgtggagaaaatcgaggtagttgaggatgcgagtgtagagatccaaaacgacgccggttctggggttggagatgtcgttctctgtaacgg |
36902950 |
T |
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| Q |
425 |
tagcaatttgaaagttgtttaggagttgaactatttctggccggcgaagccttgggtattcgtagttcgacatcgccatgttcttcttcaaccgctact |
523 |
Q |
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| T |
36902949 |
tagcaatttgaaagttgtttaggagttgaactatttctggccggcgaagccttgggtattcgtagttcgacatcgccatgttcttcttcaaccgctact |
36902851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 36892200 - 36892426
Alignment:
| Q |
31 |
cagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttcttaggacattcaagta |
130 |
Q |
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| T |
36892200 |
cagaaactgagaagtgcaccgaggaaaaactcagttcgacgaggatcaggtttgagaagatcagcaaagttgaatgaatatttctgaggacattcaagag |
36892299 |
T |
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| Q |
131 |
agttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctctagtgcatcgaaatcaag |
230 |
Q |
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| T |
36892300 |
cattaagcatttctatgatcttgttgtacagcttaataacaggaaccgctccaacgtgaagatcgggattctcaagatgctctagggcattgaactcaag |
36892399 |
T |
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| Q |
231 |
ctgtccgttgtcttcgctgtgagaaat |
257 |
Q |
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| T |
36892400 |
ctgttcgtcgtattccctgtgagaaat |
36892426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 17480321 - 17480536
Alignment:
| Q |
15 |
aacgaacctgtcgagacagaaattgagaagagctccaaggaaaaactcggttcgatgaggatcgggtttgagaagatcggcaaagttaaatgtgtatttc |
114 |
Q |
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| T |
17480321 |
aacgaacctgtccagacagaaattgagaagagcaccgagaaagaactcggtacgatgaggatcaggcttaacaagatcagccaagttaaacgtgtatttc |
17480420 |
T |
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| Q |
115 |
ttaggacattcaagtaagttaagcatttccttgatcttgttataaagcttgatagcatgaatagatccaacgtgaagatcgggattctcgagatgctcta |
214 |
Q |
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| T |
17480421 |
ttaggacattcaagagtattaagcatttccttgatcttattatacaccttgataacaggaaccgatccaacgtgaagatcaggattttcgagatgctcaa |
17480520 |
T |
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| Q |
215 |
gtgcatcgaaatcaag |
230 |
Q |
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| T |
17480521 |
ctgcattgaaatcaag |
17480536 |
T |
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