View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_14 (Length: 533)
Name: NF13119_low_14
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 12 - 516
Target Start/End: Original strand, 9935172 - 9935676
Alignment:
| Q |
12 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935172 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
9935271 |
T |
|
| Q |
112 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9935272 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
9935371 |
T |
|
| Q |
212 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
9935372 |
tactactggtgttggacaacatcaaatgtgggctgctcaattctacaaatacaagagacctaggcagtggttaacttctggtggacttggtgcaatgggt |
9935471 |
T |
|
| Q |
312 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
411 |
Q |
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| T |
9935472 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
9935571 |
T |
|
| Q |
412 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtc |
511 |
Q |
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| T |
9935572 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctaccggtc |
9935671 |
T |
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| Q |
512 |
aaata |
516 |
Q |
| |
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||||| |
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| T |
9935672 |
aaata |
9935676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 215 - 484
Target Start/End: Original strand, 3472799 - 3473068
Alignment:
| Q |
215 |
tactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggtttc |
314 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||| ||||||||||| || || | ||| ||||| |||||||| || |
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| T |
3472799 |
tactggtgttggacaacatcagatgtgggctgctcagttttataggtacaagagaccaaggcagtggttgacatctgctggtcttggcgctatgggattt |
3472898 |
T |
|
| Q |
315 |
ggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagttag |
414 |
Q |
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| T |
3472899 |
ggattgccggctgccatgggagctgctgttgccaatcccgacgctattgtggttgacatcgatggtgatggaagttttatgatgaatgttcaggaattgg |
3472998 |
T |
|
| Q |
415 |
ctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgt |
484 |
Q |
| |
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||||||| | | ||| ||| | || || |||||| ||||||||||||||||||| ||||| |||||||| |
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| T |
3472999 |
ctactatcaaggtggagaatctccctgttaagatattgttgttgaataatcaacacttgggtatggttgt |
3473068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 451 - 507
Target Start/End: Original strand, 9924712 - 9924768
Alignment:
| Q |
451 |
tgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctacc |
507 |
Q |
| |
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|||||||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |
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|
| T |
9924712 |
tgttgttgaataattaacatttgggaatggttactcagtgggaggatagattctacc |
9924768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 12 - 506
Target Start/End: Original strand, 45477118 - 45477612
Alignment:
| Q |
12 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaaacttgattttgaggcatggagacaggagttgaatgtgcaga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
45477118 |
atgaaggtggcgttggaaggtcttaatagagttttggagagtaaaggaatcaaggggaagcttgattttgaggcatggaggcaggagttgaatgtgcaga |
45477217 |
T |
|
| Q |
112 |
agctgaaatttcctcttgcttttaagagatttgagaatgccatttcgcctcaatatgcaattaagatgcttgaagagttaactaatggtgatgctattgt |
211 |
Q |
| |
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|| | ||||||||||||| |||||||| ||||||| |||| ||||||||||| ||||| ||| || ||||||| ||||| || |||||||| |||||||| |
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| T |
45477218 |
agttaaaatttcctcttggttttaagacatttgaggatgctatttcgcctcagtatgctattcaggtgcttgatgagttgacgaatggtgacgctattgt |
45477317 |
T |
|
| Q |
212 |
tactactggtgttggacaacatcaaatgtgggctgctcaattttacaaatacaagagacctaggcagtggttaacttccggtggacttggtgctatgggt |
311 |
Q |
| |
|
|| ||||||||||||||| |||||||||||| ||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
45477318 |
tagtactggtgttggacagcatcaaatgtggtctgctcagttttacaagtataagagacctaggcagtggttaacttctggtggacttggtgccatgggt |
45477417 |
T |
|
| Q |
312 |
ttcggattacctgctgcaattggtgccgcaattgctaaccctaatgccatcgttgttgacattgacggagatggtagttttttgatgaatgttcaagagt |
411 |
Q |
| |
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|| |||||||||||||| || ||||| || ||||||||||| |||| || || ||||| |||||||| |||||||||||| ||||||| |||||||||| |
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| T |
45477418 |
tttggattacctgctgctatcggtgctgctgttgctaaccctgatgcaattgtcgttgatattgacggggatggtagttttatgatgaacgttcaagagt |
45477517 |
T |
|
| Q |
412 |
tagctactataagagcggaaaatattccggtgaagataatgttgttgaataatcaacatttgggaatggttgttcaacgggaagatagattctac |
506 |
Q |
| |
|
||||||||||||||| || ||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||||||| |
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|
| T |
45477518 |
tagctactataagagtagagaatcttccggttaagatcctgttgttgaataatcaacatttgggtatggttgttcaatgggaggatagattctac |
45477612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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