View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_15 (Length: 526)
Name: NF13119_low_15
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 227 - 507
Target Start/End: Complemental strand, 40466239 - 40465968
Alignment:
| Q |
227 |
gaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaag |
326 |
Q |
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| T |
40466239 |
gaaatgaaggtatcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaag |
40466140 |
T |
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| Q |
327 |
aattggtaattattactacttttgaannnnnnnnncattttccttattttatcatcatgaataatacaatannnnnnncataacttcttcatttgtcttt |
426 |
Q |
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| T |
40466139 |
aattggtaattattactacttttgaa-ttttttttcattttccttattttatcatcatgaataatacaata-ttttttcataacttc-------gtcttt |
40466049 |
T |
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| Q |
427 |
gtactttagtgcttaatttatttatatactctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtatttg |
507 |
Q |
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| T |
40466048 |
gtactttagtgcttaatttatttatatactctctgtaacaaaatataagtaaaagcgagtcaaagaaatttgacgtatttg |
40465968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 11 - 172
Target Start/End: Complemental strand, 40466455 - 40466294
Alignment:
| Q |
11 |
cacagataagacattggatcaagttttccttggttccctatagacgagtcagcatcattttaatgatgtggtaaatacgagttcaaactttatgcttatt |
110 |
Q |
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| T |
40466455 |
cacagataagacattggatcaagttttccttggttccctatagacgagtcagcatcattttaatgatgtggtaaatacgagttcaaactttatgcttatt |
40466356 |
T |
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| Q |
111 |
tttgcctttatatataccatataaccgtgcttatacaccatcaaccacacatatcaaaggtt |
172 |
Q |
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| T |
40466355 |
tttgcctttatatataccatataaccgtgcttatacaccatcaaccactcatatcaaaggtt |
40466294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 21624013 - 21624111
Alignment:
| Q |
238 |
atcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggtaat |
336 |
Q |
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||||||||||||||| |||||||| |||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||| || |||||||| |
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| T |
21624013 |
atcaaagtttaagaggatttgtgttttttgtggtagtagtcctggtaacaagagtagctataaagatgctgctattgagcttggaaatgagttggtaat |
21624111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 28272022 - 28271927
Alignment:
| Q |
239 |
tcaaagtttaagagaatttgtgtgttttgtggtagtagccctggtaacaaaactagctataaggatgctgctattgaacttggaaaagaattggta |
334 |
Q |
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|||||||| ||||| ||||||| |||||||| ||||| ||||| || |||| ||| ||| | |||||||| |||||||||||||| ||||||||| |
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| T |
28272022 |
tcaaagttcaagagggtttgtgtcttttgtggaagtagtcctggcaagaaaagtagttatcaagatgctgccattgaacttggaaatgaattggta |
28271927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 38462751 - 38462800
Alignment:
| Q |
457 |
ctctataacaaaatataagtaaaagcgggtcaaagaaatttgacgtattt |
506 |
Q |
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|||| |||||||||||||| ||||||| |||||||||| |||| |||||| |
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| T |
38462751 |
ctctgtaacaaaatataagcaaaagcgagtcaaagaaagttgaggtattt |
38462800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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