View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_17 (Length: 522)
Name: NF13119_low_17
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 13 - 505
Target Start/End: Complemental strand, 34243324 - 34242835
Alignment:
| Q |
13 |
aatattatataagctgaatcaaatgattaaccattgatcaaggtaatgagaactattttcccactatatcctcttccataatcccctacctgagatcgaa |
112 |
Q |
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| T |
34243324 |
aatattatataagctgaatcaaatgattaaccattgatcaaggtaatgagaactattttcccactatatcctcttccataatcccctacctgagatcgaa |
34243225 |
T |
|
| Q |
113 |
tccttgaccacaagattaagggagagatcaaagcctatggattgcctgcagtcacttttgaccacagttgcaatcctgatccttggtaaactttgaaggc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34243224 |
tccttgaccacaagattaagggagagatcaaagcctatggattgcctgcagtcacttttgaccacagttgcaatcctgatccttggtaaactttgaaggc |
34243125 |
T |
|
| Q |
213 |
aaggatcaatttgaaattgaaatatacattatatgagctgtccgattcaacataaacgatgcatattagtctgattgcggacaatccaagtccgtattag |
312 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34243124 |
aaggatcaatttgaaattgaaatatacatgatatgagctgtccgattcaacataaacgatgcatattagtctgattgcggacaatccaagtccgtattag |
34243025 |
T |
|
| Q |
313 |
ctctagggtcttgagtcctaacataagtacagcagcatgcatcacacaatactagcacggcgtgcaaaaattaatagtaatagctagtaacattgattgg |
412 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34243024 |
ctctagggtcttcagtcctaacataagtacagcagcatgcatcacacaatactagcacggcgtgcaaaaattaatagtaatagctagtaacattgattgg |
34242925 |
T |
|
| Q |
413 |
tatgttatgaatatattattataacaaaatcaaaagtggtcccaaaagctgatgctaaagnnnnnnnnccagccatgcatttcattttcaaat |
505 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
34242924 |
tatgttatgaatata---ttataacaaaatcaaaagtggtcccaaaagctgaggctaaagaaaaagaaccagccatgcatttcattttcaaat |
34242835 |
T |
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