View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_19 (Length: 484)
Name: NF13119_low_19
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 22 - 471
Target Start/End: Original strand, 33441640 - 33442087
Alignment:
| Q |
22 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33441640 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactg |
33441739 |
T |
|
| Q |
122 |
gtnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctt |
221 |
Q |
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| T |
33441740 |
ggaaaaaaac--agcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctt |
33441837 |
T |
|
| Q |
222 |
tggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggt |
321 |
Q |
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||||||||||||||||||||| || | ||||||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33441838 |
tggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggt |
33441937 |
T |
|
| Q |
322 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttc |
421 |
Q |
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| T |
33441938 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttc |
33442037 |
T |
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| Q |
422 |
tcccataggttgtaattataattttatcttgtccactagttaacacaggt |
471 |
Q |
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| T |
33442038 |
tcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33442087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 22 - 471
Target Start/End: Original strand, 33451860 - 33452307
Alignment:
| Q |
22 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactagaag |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33451860 |
ttttattaatcataaataacaaaatgatattacattcaccaatgtaaacaaactaaataaataataatgaagggggctaattattagtaataactaactg |
33451959 |
T |
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| Q |
122 |
gtnnnnnnnnntagcctctccttgaaacatcacacatgatcgattaacatccaatcttaaacagctatcaatctctgttaaatatttggaacaacttctt |
221 |
Q |
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| T |
33451960 |
ggaaaaaaac--agcctctccttgaaacatcacacatgatcggttaacatccaatcttaaacagctatcaatctctgttaaatatttggaaaagcttctt |
33452057 |
T |
|
| Q |
222 |
tggcagcagggatcgacgggggacaccactagcaggccatggtgaactcgaaggtggtgcttcaggtgtcgccaggtcaagtgatggtgatggagaaggt |
321 |
Q |
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| T |
33452058 |
tggcagcagggatcgacggggaacgctactagcaggccatggtgcattcgaaggcggtgcttcaggtgtcaccaggtcaagtgatggtgatggagaaggt |
33452157 |
T |
|
| Q |
322 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttc |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33452158 |
gaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttc |
33452257 |
T |
|
| Q |
422 |
tcccataggttgtaattataattttatcttgtccactagttaacacaggt |
471 |
Q |
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||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
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| T |
33452258 |
tcccataggttgtaattataattttgtcttgcccactggttaacacaggt |
33452307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 329 - 476
Target Start/End: Original strand, 33399629 - 33399776
Alignment:
| Q |
329 |
ctggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtaccatcttctcccata |
428 |
Q |
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||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| |
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| T |
33399629 |
ctggataccaaccatcttgttttggtaaaacatttatgaaaagcttttgtccattttcgcagtgattggcaacacctgaaatgtaccatcttctcccata |
33399728 |
T |
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| Q |
429 |
ggttgtaattataattttatcttgtccactagttaacacaggttctgc |
476 |
Q |
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|||||| | | ||||||||| |||||||| |||||||| ||| |||| |
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| T |
33399729 |
ggttgtcaatgcaattttatcatgtccacttgttaacactggtgctgc |
33399776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 316 - 467
Target Start/End: Original strand, 33395729 - 33395880
Alignment:
| Q |
316 |
gaaggtgaaggtactggagaccaaccatcttgttttggctgcacagttatgaaaagcttttgtccattttcgcagtgatcggtaacacttgaaatgtacc |
415 |
Q |
| |
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|||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| | |||||||| | | ||| ||||||||||| |
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| T |
33395729 |
gaaggtgagggtactggagaccaaccaaactgtggtggctgcacgtttatgaaaagcttttggccaagattgcagtgatgagcagcacctgaaatgtacc |
33395828 |
T |
|
| Q |
416 |
atcttctcccataggttgtaattataattttatcttgtccactagttaacac |
467 |
Q |
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||||||| ||||||||||| | || |||| |||| ||||||||||||||||| |
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| T |
33395829 |
atcttcttccataggttgtcaataaaattgtatcatgtccactagttaacac |
33395880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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