View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_2 (Length: 771)
Name: NF13119_low_2
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 34 - 559
Target Start/End: Original strand, 2560333 - 2560850
Alignment:
| Q |
34 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
133 |
Q |
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| T |
2560333 |
ttggagttttttcatgcagggttaattgttggttttttctatattacctataaaaaattgagcttttattaccagggtcaatgatagtttatggatgtca |
2560432 |
T |
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| Q |
134 |
cttgaaaatgtacttaagtgtccggtgtttattggtcggagaaattacctactattttttcatggataacctagatgtcaccttaatcgtttaaagatta |
233 |
Q |
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| T |
2560433 |
cttgaaaatgtacttaagtgtccgatgtttattggtcggataaattatctactattttttcatggataatctagatgtcactttaa-------------- |
2560518 |
T |
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| Q |
234 |
gaagctatgcgtaaccttaaa---tgttatagaaaaactattttggagagttt-gctcaaattgtatcttgactactgagattctcaagttattaattga |
329 |
Q |
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| T |
2560519 |
-aatctatgcgtaaccttaaaaaatgttatagaaaaactattttggagagttttgctcgaattgtatcttgactactgagattctcaagttattaattga |
2560617 |
T |
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| Q |
330 |
acttcaaataatgaagttcatggcaagataaatttt---ttctggttacaaaattcggtttatgttatatttattaaaatacttcattgtgattgcgatg |
426 |
Q |
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| T |
2560618 |
acttcaaataatgaagttcatggcaagataaatttttttttctggttacaaaattcggtttatgttatatttattaaaatacttcattgtgattgcgatg |
2560717 |
T |
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| Q |
427 |
catcgtctactcgtgtgtactacaaactacaagtacaaagcttatggcaagataaatgaaatctatgtataatgtgttannnnnnnaatggtaaagaata |
526 |
Q |
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| T |
2560718 |
catcgtctactcgtgtgtactacaaactacaagtacaaagcttatggcaagataaatgaaatctatgtataatgtgttatttttttaatggtaaagaata |
2560817 |
T |
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| Q |
527 |
ttgtataaatcagaaacactatggatactctaa |
559 |
Q |
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| T |
2560818 |
ttgtataaatcagaaacactgtggatattctaa |
2560850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 551 - 733
Target Start/End: Original strand, 2561914 - 2562098
Alignment:
| Q |
551 |
atactctaatccattacaagaaatacacaagatataaaaaggaaataaaagtactgctaacaaaggacgacaaatgtaacatgtacaccacaccaaacag |
650 |
Q |
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| T |
2561914 |
atactctaatccattacaagaaatacacaagatataaaaaggaaataaaagtactgctaacaaaggacgacaaatgtaacatgtacaccacaccaaacag |
2562013 |
T |
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| Q |
651 |
aactcaaaatggtaagaaatatgtata--aaaggcaaacaaaaataatctagaagagtaacaatactgaaaatggtaagaagtaa |
733 |
Q |
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| T |
2562014 |
aactcaaaatggtaagaaatatgtataataaaggcaaacaaaaataatctagaagagtaacaatactgaaaatggtaagaagtaa |
2562098 |
T |
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