View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_24 (Length: 434)

Name: NF13119_low_24
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_24
NF13119_low_24
[»] chr6 (24 HSPs)
chr6 (20-397)||(10579016-10579390)
chr6 (21-388)||(6596154-6596518)
chr6 (94-230)||(6423833-6423969)
chr6 (184-231)||(6436835-6436882)
chr6 (184-231)||(7993631-7993678)
chr6 (92-142)||(6395553-6395603)
chr6 (309-389)||(7132143-7132223)
chr6 (186-229)||(6432759-6432802)
chr6 (92-142)||(6410711-6410761)
chr6 (323-389)||(6423743-6423809)
chr6 (313-389)||(6410532-6410608)
chr6 (177-229)||(9412050-9412102)
chr6 (191-231)||(19633024-19633064)
chr6 (187-226)||(6410627-6410666)
chr6 (103-229)||(7132234-7132360)
chr6 (103-229)||(7138080-7138206)
chr6 (92-142)||(19633116-19633166)
chr6 (324-389)||(6403407-6403472)
chr6 (186-231)||(6403502-6403547)
chr6 (330-383)||(6427025-6427078)
chr6 (184-229)||(7135157-7135202)
chr6 (103-140)||(7135246-7135283)
chr6 (337-389)||(6594124-6594176)
chr6 (92-140)||(14809717-14809765)
[»] chr5 (1 HSPs)
chr5 (178-226)||(17205662-17205710)
[»] chr1 (3 HSPs)
chr1 (182-230)||(30827723-30827771)
chr1 (177-229)||(7555124-7555176)
chr1 (188-231)||(33161122-33161165)
[»] chr4 (2 HSPs)
chr4 (187-224)||(10633967-10634004)
chr4 (94-142)||(553775-553823)
[»] chr8 (1 HSPs)
chr8 (180-223)||(32151900-32151943)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 397
Target Start/End: Original strand, 10579016 - 10579390
Alignment:
20 gctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||    
10579016 gctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagctctctccggcgaaagcatctttcccacagatgggttacgagctttc 10579115  T
120 tcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattgtttcccattgctcaaag 219  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||    
10579116 tcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattgtttcccattgctcaaag 10579215  T
220 aactcaacctcgaactcagttgccctattctcaaaagtcaaactattttcaagaatggaggaagtcactctctgttatcaaaacgtcggttggtcaagaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||||||||||| ||    
10579216 aactcaacctcgaactcagttgccctattctcaaaagtcaaactattttcaagaat---ggaagtcaatctctgttatcaaaacgtcggttggtcaacaa 10579312  T
320 tcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctttacaacac 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
10579313 tcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgagtctttacaacac 10579390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 21 - 388
Target Start/End: Original strand, 6596154 - 6596518
Alignment:
21 ctcgttctctccggtgaacctaagttcccgtttgagaaactcaactcgctagcactctccggcgaaagcatctttcccacagatgggttgcaagctttct 120  Q
    |||||| || |||| |||||||  ||||| ||| ||||||| || ||||| |  |||||||||||||||||||||||| | || ||||||| || |||||    
6596154 ctcgttttcaccggcgaacctagattcccatttaagaaacttaaatcgctcgttctctccggcgaaagcatctttcccgctgacgggttgcgagttttct 6596253  T
121 cccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattgtttcccattgctcaaaga 220  Q
    |||||||||||||||||||||| | | | ||||||||||   |||| || |||||||||||||||||||||||||| |||||||||||||||||||||||    
6596254 cccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtttcccattgctcaaaga 6596353  T
221 actcaacctcgaactcagttgccctattctcaaaagtcaaactattttcaagaatggaggaagtcactctctgttatcaaaacgtcggttggtcaagaat 320  Q
    ||||||| ||||| ||| |  ||||||| || || ||||||||| ||||||||||   |||| ||||||||||||||||||||||| ||||||||| |||    
6596354 actcaacatcgaaatcaataaccctattttccaatgtcaaactaatttcaagaat---ggaactcactctctgttatcaaaacgtcagttggtcaacaat 6596450  T
321 cgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatct 388  Q
    ||||||||||||||||| | ||||||||||||||||||||| |||| || ||||||||||||||||||    
6596451 cgaactgatttcattaacgaaattcactctctgttatcaaattgtcgatttattcaacatttgaatct 6596518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 6423969 - 6423833
Alignment:
94 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcat 193  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||| | | | ||||||| ||     || || | ||| |  ||| |||||||  |    
6423969 ttcccacaaatgggttgcgagctttctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgt 6423870  T
194 tgccgattgtttcccattgctcaaagaactcaacctc 230  Q
     ||| ||||||||||||||||||||||||||||||||    
6423869 ggccaattgtttcccattgctcaaagaactcaacctc 6423833  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Complemental strand, 6436882 - 6436835
Alignment:
184 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 231  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||||    
6436882 tgttactcattgccgattgtttccctttgctcaaacaactcaacctcg 6436835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 7993631 - 7993678
Alignment:
184 tgttactcattgccgattgtttcccattgctcaaagaactcaacctcg 231  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||    
7993631 tgttactcattgccaattgtttccctttgctcaaagaactcaacctcg 7993678  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 6395603 - 6395553
Alignment:
92 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 142  Q
    ||||||||||||||||||||||||| |||||||||| || |||||||||||    
6395603 ctttcccacagatgggttgcaagctctctcccaaaatattacaactttgac 6395553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 389
Target Start/End: Complemental strand, 7132223 - 7132143
Alignment:
309 ttggtcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 389  Q
    ||||| || |||| |||| | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||||||||    
7132223 ttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttgaatctt 7132143  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 6432802 - 6432759
Alignment:
186 ttactcattgccgattgtttcccattgctcaaagaactcaacct 229  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
6432802 ttactcattgccgattgtttccctttgctcaaacaactcaacct 6432759  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 6410761 - 6410711
Alignment:
92 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 142  Q
    |||||||| | |||||||||||| ||||||||||||||| |||||||||||    
6410761 ctttcccataaatgggttgcaagttttctcccaaaacattacaactttgac 6410711  T

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Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 389
Target Start/End: Complemental strand, 6423809 - 6423743
Alignment:
323 aactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 389  Q
    |||| |||||||||||||||||| |  | ||||||| ||||||| |||||| |||||||||||||||    
6423809 aactaatttcattaatggaattcgcaatttgttatccaagtgtcaatgtatacaacatttgaatctt 6423743  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 389
Target Start/End: Complemental strand, 6410608 - 6410532
Alignment:
313 tcaagaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 389  Q
    ||||| ||||| || ||||||||||||||||||||| ||||||||| ||||| | |||| | |||||| || |||||    
6410608 tcaagtatcgatctaatttcattaatggaattcactatctgttatccaagtgccaatgtttacaacatatggatctt 6410532  T

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Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 9412102 - 9412050
Alignment:
177 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 229  Q
    |||||||||||||||||||| || |||||||| |||||  |||||||||||||    
9412102 aatgacttgttactcattgctgaatgtttccctttgcttgaagaactcaacct 9412050  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 19633064 - 19633024
Alignment:
191 cattgccgattgtttcccattgctcaaagaactcaacctcg 231  Q
    |||||||||||||||||||||| | ||||||||||||||||    
19633064 cattgccgattgtttcccattgttgaaagaactcaacctcg 19633024  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 6410666 - 6410627
Alignment:
187 tactcattgccgattgtttcccattgctcaaagaactcaa 226  Q
    ||||| |||| |||||||||||||||||||||||||||||    
6410666 tactctttgctgattgtttcccattgctcaaagaactcaa 6410627  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 7132360 - 7132234
Alignment:
103 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 202  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
7132360 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattg 7132261  T
203 tttcccattgctcaaagaactcaacct 229  Q
    ||| ||| |||| ||||||||||||||    
7132260 ttttccaatgcttaaagaactcaacct 7132234  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 229
Target Start/End: Complemental strand, 7138206 - 7138080
Alignment:
103 atgggttgcaagctttctcccaaaacataacaactttgacatgttttacttgttctactgacttcctatacaaaaatgacttgttactcattgccgattg 202  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| | |   |||||| |     || || ||||| || ||  ||||||| |||||||||||    
7138206 atgggttgcgagctttctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattg 7138107  T
203 tttcccattgctcaaagaactcaacct 229  Q
    ||| ||| |||| ||||||||||||||    
7138106 ttttccaatgcttaaagaactcaacct 7138080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 19633166 - 19633116
Alignment:
92 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 142  Q
    |||||||||| ||||||||| |||||||||| ||| ||| |||||||||||    
19633166 ctttcccacaaatgggttgcgagctttctccgaaagcattacaactttgac 19633116  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 6403472 - 6403407
Alignment:
324 actgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 389  Q
    ||||| || |||||||||||  ||||||||||||| ||||||  |||||| ||||||||| |||||    
6403472 actgactttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatctt 6403407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 186 - 231
Target Start/End: Complemental strand, 6403547 - 6403502
Alignment:
186 ttactcattgccgattgtttcccattgctcaaagaactcaacctcg 231  Q
    |||||||||||||||||||||||   ||||||| ||||||||||||    
6403547 ttactcattgccgattgtttccctaagctcaaacaactcaacctcg 6403502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 383
Target Start/End: Complemental strand, 6427078 - 6427025
Alignment:
330 ttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 383  Q
    |||||||||  |||||||| | ||||||| |||||||||||||| |||||||||    
6427078 ttcattaattcaattcactgtatgttatccaagtgtccatgtatacaacatttg 6427025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 7135202 - 7135157
Alignment:
184 tgttactcattgccgattgtttcccattgctcaaagaactcaacct 229  Q
    ||||||| |||||||||||||| ||| ||| |||||||||||||||    
7135202 tgttacttattgccgattgttttccaatgcacaaagaactcaacct 7135157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 140
Target Start/End: Complemental strand, 7135283 - 7135246
Alignment:
103 atgggttgcaagctttctcccaaaacataacaactttg 140  Q
    ||||||||| |||||||||||||||||| |||||||||    
7135283 atgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 389
Target Start/End: Original strand, 6594124 - 6594176
Alignment:
337 atggaattcactctctgttatcaaagtgtccatgtattcaacatttgaatctt 389  Q
    |||||||  ||||| ||||||| ||||||| |||||| |||||||||||||||    
6594124 atggaatgtactctttgttatccaagtgtcgatgtatacaacatttgaatctt 6594176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 14809765 - 14809717
Alignment:
92 ctttcccacagatgggttgcaagctttctcccaaaacataacaactttg 140  Q
    ||||||| || | |||||||||| ||||||||||||||| |||||||||    
14809765 ctttcccgcaaaagggttgcaagatttctcccaaaacattacaactttg 14809717  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 226
Target Start/End: Complemental strand, 17205710 - 17205662
Alignment:
178 atgacttgttactcattgccgattgtttcccattgctcaaagaactcaa 226  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
17205710 atgacctgttactcattgccgattgtttccctttgctcaaagaactcaa 17205662  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 230
Target Start/End: Complemental strand, 30827771 - 30827723
Alignment:
182 cttgttactcattgccgattgtttcccattgctcaaagaactcaacctc 230  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||    
30827771 cttgttactcattgccgattgtttccctttgctcaaacaactcaacctc 30827723  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7555176 - 7555124
Alignment:
177 aatgacttgttactcattgccgattgtttcccattgctcaaagaactcaacct 229  Q
    |||||||||||||||||||| || |||||||| |||||| |||||||||||||    
7555176 aatgacttgttactcattgctgaatgtttccctttgctcgaagaactcaacct 7555124  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 231
Target Start/End: Complemental strand, 33161165 - 33161122
Alignment:
188 actcattgccgattgtttcccattgctcaaagaactcaacctcg 231  Q
    |||| |||||||||||||||| ||||||||| ||||||||||||    
33161165 actcgttgccgattgtttccctttgctcaaaaaactcaacctcg 33161122  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 10633967 - 10634004
Alignment:
187 tactcattgccgattgtttcccattgctcaaagaactc 224  Q
    |||||||||||||||||||||| |||||||||||||||    
10633967 tactcattgccgattgtttccctttgctcaaagaactc 10634004  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 553823 - 553775
Alignment:
94 ttcccacagatgggttgcaagctttctcccaaaacataacaactttgac 142  Q
    ||||| || ||||||||| |||||||||||||||||| |||||||||||    
553823 ttcccgcaaatgggttgcgagctttctcccaaaacattacaactttgac 553775  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 32151943 - 32151900
Alignment:
180 gacttgttactcattgccgattgtttcccattgctcaaagaact 223  Q
    |||||||| |||||||||||||||||||| |||||| |||||||    
32151943 gacttgttcctcattgccgattgtttccctttgctcgaagaact 32151900  T

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