View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_30 (Length: 401)
Name: NF13119_low_30
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 2175793 - 2175602
Alignment:
| Q |
11 |
atatcatagatatttactattatcttttaccatctaaaatgtatttatctcataacatattttctacttatcttcatacttctctcgttttatatataaa |
110 |
Q |
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| T |
2175793 |
atattatagatatttacaattatcttttaccatctaaaatgtatttatctcataacatattttctacttatcttcatacttctctcgttctatatataaa |
2175694 |
T |
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| Q |
111 |
ataaagttaatcaacaaaagataacgtatatgattcaaatcttatgttaggtagtagatctgtttgtttatatatctcattttgacttgtta |
202 |
Q |
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| T |
2175693 |
agaaagttaatcaacaaaaggtaacgtatatgattcaaatcttatgttagatagtagatctgtttgtttatatatttcattttgacttgtta |
2175602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 248 - 387
Target Start/End: Complemental strand, 2175122 - 2174983
Alignment:
| Q |
248 |
ttggttaaccatttcgatgtatttatttatttttcatcgaaagggtgtannnnnnnatgttaatattttagattaatttcggagatattcatttgggagc |
347 |
Q |
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| T |
2175122 |
ttggttaaccatttggatgtatttatttatttttcatccaaagggtgtatttttttatgttaatattttagattcatttcgaagatatttatttgggagc |
2175023 |
T |
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| Q |
348 |
tactgatgttgattttgattgcacgatgtttggttactaa |
387 |
Q |
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| T |
2175022 |
tactgatattgattttgattgcacgatgtttggttgctaa |
2174983 |
T |
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