View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_31 (Length: 370)
Name: NF13119_low_31
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 7292717 - 7293068
Alignment:
| Q |
1 |
aaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaacctttgctgttcttttaaggaacattgttgataaaacttatactgg |
100 |
Q |
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| T |
7292717 |
aaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaaccttagctgttcttttaaggaacattgttgataaaacttatactgg |
7292816 |
T |
|
| Q |
101 |
tgtttatcatgttgatatcactattcactttcacggttacccttttgatgttaagaagactcataagacaaaaaagtttgattctttagcatttaggagt |
200 |
Q |
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| T |
7292817 |
tgtttatcatgttgatatcactattcactttcacggttacccttttgatgttaagaagactcataagacaaaaaagtttgattctttagcatttaggagt |
7292916 |
T |
|
| Q |
201 |
ggttttcatgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaagg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7292917 |
ggttttcatgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgatgtgggtgtaaagg |
7293016 |
T |
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| Q |
301 |
aatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttc |
352 |
Q |
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| T |
7293017 |
aatttgtggttcctcaaaatgcttatagggctgtgttagaagtgtatgtttc |
7293068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 7288959 - 7289324
Alignment:
| Q |
1 |
aaaaagacatcacaaggtataaatctttgttgttgaatcatcaacaaaatcaaacctttgctgttcttttaaggaacattgttgataaaacttatactgg |
100 |
Q |
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|||||||||| ||||||||| |||||||||||||||||| |||| |||||||||| || |||||| | || || || |||||||||||||| |||||||| |
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| T |
7288959 |
aaaaagacattacaaggtatcaatctttgttgttgaatcctcaaaaaaatcaaactttagctgttttgttgagaaatattgttgataaaacatatactgg |
7289058 |
T |
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| Q |
101 |
tgtttatcatgttgatatcactattcactttcacggttacccttttgatg---tta---agaagactcataagacaaaaaagtttgattctttagcattt |
194 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||| | | | ||| |||| |||||||||||||||||||| |||| ||| ||||| |
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| T |
7289059 |
tgtttatcatgttgatattgctattcacttttacggttaccactgggctagttttagacagaacactcataagacaaaaaagttagattgtttttcattt |
7289158 |
T |
|
| Q |
195 |
aggagtggtttt------catgcagatttgatcttgcccatttcaaggaatctcccaaaaaatgatgtgttgtggtttgaaattcaaaattcaactgatg |
288 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||| |
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| T |
7289159 |
aggagtgattttaaatctcatgcagatttgatcttgcccatttcaaggaatcttccattcaatgatgggttctggtttgaaattcaaaattcaactgatg |
7289258 |
T |
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| Q |
289 |
tgggtgtaaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttctt |
354 |
Q |
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| T |
7289259 |
tgggtttgaaggaatttgtggttcctcaaaatgcttatagggctgttttagaagtgtatgtttctt |
7289324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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