View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_34 (Length: 349)
Name: NF13119_low_34
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 15 - 339
Target Start/End: Complemental strand, 34526435 - 34526111
Alignment:
| Q |
15 |
aatggcatcacgtgtatgtcaggttgtagatgatcagtgcctctgccctggtataaaaaataatggtaaaaatattaaagagttccaaaattactctgtt |
114 |
Q |
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| T |
34526435 |
aatggcatcacgtgtatgtcaggttgtagatgatcagtgcctctgccctggtataaaaaataatggtaaaaatattaaagagttccaaaattactctgtt |
34526336 |
T |
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| Q |
115 |
tggaacgttgtataacatgcttatttgagtattggggtttctatctaggaaagagtgaaggagaataagcttatgaagtgtcatatgtcaaagttacttt |
214 |
Q |
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| T |
34526335 |
tggaacgttgtataacatgcttatttgagtattggggtttctatctaggaaagagtgaaggagaataagcttgtgaagtgtcatatgtcaaagttacttt |
34526236 |
T |
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| Q |
215 |
cataaccaatgagtagattaattataggatgaaatgtctgtttagttgttttcattgccataatgcatagtcacacacgtgctaggtaccttctatttgt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34526235 |
cataaccaatgagtagattaattataggatgaaatgtctgtttagttgttttcattgccataatgcatagtcacacacgtgctaggtaccttctatttgt |
34526136 |
T |
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| Q |
315 |
cagatcaacctctagtttctgatga |
339 |
Q |
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| T |
34526135 |
cagatcaacctctagtttctgatga |
34526111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 209
Target Start/End: Original strand, 30722487 - 30722525
Alignment:
| Q |
171 |
gaaggagaataagcttatgaagtgtcatatgtcaaagtt |
209 |
Q |
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| T |
30722487 |
gaaggagaataagcttacgaagtgtcatttgtcaaagtt |
30722525 |
T |
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