View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_38 (Length: 333)
Name: NF13119_low_38
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 1357226 - 1356918
Alignment:
| Q |
11 |
cataggctagtttaaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataaggg |
110 |
Q |
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| T |
1357226 |
cataggctagtttaaggtaatagagtttgttggagggaatgtccatggttgaatctgcatttgttggaagatggtttttgtcaatgtaagatgataaggg |
1357127 |
T |
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| Q |
111 |
aagtttgatgagattaacaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattt |
210 |
Q |
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| T |
1357126 |
aagtttgatgagattaaaaaatggtgaaagggtttgtgagagtttaggaagacgatctatgattgaaggagtagatatgagtgtgacaaagtgaccattt |
1357027 |
T |
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| Q |
211 |
tgtgaaagaatcttggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgtttttcttgtcatcca |
310 |
Q |
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| T |
1357026 |
tgtgaaagaatcttggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgtttttcttgttatcca |
1356927 |
T |
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| Q |
311 |
tgaatgaat |
319 |
Q |
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| T |
1356926 |
tgaatgaat |
1356918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 295
Target Start/End: Complemental strand, 12845785 - 12845690
Alignment:
| Q |
200 |
agtgaccattttgtgaaagaatcttggaaacctcaaaacatgggtacatgtgtcccatggctatccatggaaacatgacaacatgaagaggtttgt |
295 |
Q |
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| T |
12845785 |
agtgacccttttgagcaagaatcttggccaactcaaaataagggtatatgtgtcccatagctagccatggaaccattacaacatgaagaggcttgt |
12845690 |
T |
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