View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_39 (Length: 331)

Name: NF13119_low_39
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_39
NF13119_low_39
[»] chr6 (15 HSPs)
chr6 (17-313)||(13861154-13861450)
chr6 (27-313)||(13471171-13471457)
chr6 (27-313)||(13942669-13942955)
chr6 (27-313)||(14016685-14016971)
chr6 (27-313)||(14086272-14086558)
chr6 (46-313)||(14112100-14112367)
chr6 (24-232)||(14026643-14026851)
chr6 (83-314)||(13873461-13873692)
chr6 (46-311)||(13891180-13891445)
chr6 (166-313)||(14048917-14049064)
chr6 (46-126)||(14048838-14048918)
chr6 (17-80)||(14086109-14086172)
chr6 (280-313)||(14026857-14026890)
chr6 (24-64)||(13942513-13942553)
chr6 (24-80)||(14016529-14016585)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 7e-74; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 17 - 313
Target Start/End: Complemental strand, 13861450 - 13861154
Alignment:
Q  17 ggttaaaagaaaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggat 116  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||| | |  |||||||||| |||||||||||||||||| ||||||||||||||||    
T  13861450 ggttgaaagaaaggtcaagctcaacaagattggaacttatgtttgacaacaacgggaatatcatggatgacacaaagttgttcacagagagatcaaggat 13861351  T
Q  117 agaaagagaagtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgtt 216  Q
    |||||||||| |||||| |||||| || || |||||    ||| |||||||||||||||||||| ||||||||  |||||| |||||||| | ||||| |    
T  13861350 agaaagagaattggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagttctcttagttttggt 13861251  T
Q  217 agctcgccaaccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    | ||  ||||||||||  | |||| |||||||| |||||||||| ||||| |||| ||| | |||||||||||||||||||||||||||||||||||    
T  13861250 aacttaccaaccatttttaaccaactattaaatttatcaagattagatattgacatcagatgaagatgggttaaagaagtaagattagacaaccact 13861154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 313
Target Start/End: Complemental strand, 13471457 - 13471171
Alignment:
Q  27 aaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaa 126  Q
    |||||||||||||||||  |||||||||||||||||||||   || |||||||  ||||||||||| ||||||| |||||||||||||||||||||||||    
T  13471457 aaggtcaagctcaacaagattggaacttatgtttgacaccatatgaaatatcaatgatgacacaaatttgttccgagagagatcaaggatagaaagagaa 13471358  T
Q  127 gtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaa 226  Q
    |||||||  ||||| || || |||||   |||| ||| |||||||||||||||||||||||||  |||||| |||||| ||| ||||| |||||  ||||    
T  13471357 gtggaaaatttgaacttggattgactcaaggaatggacaaaatgatcagaaaggccacaatttcttaaacttagttctatcagttttggtagcttaccaa 13471258  T
Q  227 ccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    |  ||| || |||| |||||||||||| ||||||||||||||||  || || ||||||||||||||| |||| |||||||| |||||    
T  13471257 ctgtttccaaccaactattaaatctataaagatttgatatcgacgacatgtgaagatgggttaaagaggtaaaattagacagccact 13471171  T

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Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 13942669 - 13942955
Alignment:
Q  27 aaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaa 126  Q
    |||||||||||||||||  || |||||||||||||||||||||||||||||||  |||||  |||||||||||| |||||||||||||||||||||||||    
T  13942669 aaggtcaagctcaacaagattagaacttatgtttgacacccattggaatatcaaggatgatgcaaagttgttccaagagagatcaaggatagaaagagaa 13942768  T
Q  127 gtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaa 226  Q
    || |||| |||||| || || |||||    ||| |||||||||||||||||||| |||||| |  |||||| |||||||| |  |||| || ||  ||||    
T  13942769 gttgaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggtcacaatatcttaaacttagttctcttagatttggtaacttaccaa 13942868  T
Q  227 ccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    |||||| || |||| ||||| || ||| |||||| |||||||||  || || |||||||||||||||||||||||||||||||||||    
T  13942869 ccattttcaaccaactattagatttattaagattagatatcgaccacatgtgaagatgggttaaagaagtaagattagacaaccact 13942955  T

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Target: chr6; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 14016685 - 14016971
Alignment:
Q  27 aaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaa 126  Q
    |||||||||||||||||  || | |||||||||||||||||| ||||||||||  |||||  ||||||||||  | ||||||||||||||||||||||||    
T  14016685 aaggtcaagctcaacaagattagcacttatgtttgacacccaatggaatatcaaggatgatgcaaagttgttatcggagagatcaaggatagaaagagaa 14016784  T
Q  127 gtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaa 226  Q
    ||||||| |||||| || || |||||    ||| ||||||||||||||||||||||||||| |  |||||| |||||||||| ||||| || ||  ||||    
T  14016785 gtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaatctcttaaacttagttctctcagttttggtaacttaccaa 14016884  T
Q  227 ccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    ||||||||| |||| ||||| || ||| |||||| |||||||||  || || |||||||||||||||| ||||||||||||||||||    
T  14016885 ccatttgcaaccaactattagatttattaagattagatatcgacgacatgtgaagatgggttaaagaattaagattagacaaccact 14016971  T

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Target: chr6; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 313
Target Start/End: Original strand, 14086272 - 14086558
Alignment:
Q  27 aaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaa 126  Q
    ||||||||||  |||||  ||||||||||||||||||||||| ||||||||||  |||||  ||||| |||||| ||||||||| |||||||||||||||    
T  14086272 aaggtcaagcaaaacaagattggaacttatgtttgacacccactggaatatcaaagatgaagcaaagctgttccaagagagatcgaggatagaaagagaa 14086371  T
Q  127 gtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaa 226  Q
    ||||||| |||||| || || |||||  ||||| |||| ||||||| ||||||| ||||||||  |||||| |||||||| | |||||||| ||  ||||    
T  14086372 gtggaaaagttgaacttggattgactcagggaatggatgaaatgataagaaaggtcacaatttcttaaacttagttctcttagttttgttaacttaccaa 14086471  T
Q  227 ccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    ||||||| | |||| |||||||| |||||||||| |||||  ||| ||||  |||||||||||||||||| ||||||||||||||||    
T  14086472 ccatttgaaaccaactattaaatttatcaagattagatattcacatcaggcgaagatgggttaaagaagttagattagacaaccact 14086558  T

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Target: chr6; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 46 - 313
Target Start/End: Original strand, 14112100 - 14112367
Alignment:
Q  46 ttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaagtggaaaggttgaatttag 145  Q
    ||||||||||||||||||||||| |  |||||||  ||||||  ||||| ||||  ||| ||||||||||| ||||||||| |||||| |||||| || |    
T  14112100 ttggaacttatgtttgacacccactcaaatatcaaagatgacgtaaagtagttcaaagaaagatcaaggattgaaagagaattggaaaagttgaacttgg 14112199  T
Q  146 aatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaaccatttgcagccaattatt 245  Q
    | |||||    ||| |||||||||||||||||||| ||||||||  |||||| |||||||| | ||||| || ||  ||||||||||| | |||| ||||    
T  14112200 attgactcaatgaatggataaaatgatcagaaaggtcacaatttcttaaacttagttctcttagttttggtaacttaccaaccatttgaaaccaactatt 14112299  T
Q  246 aaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    |||| |||||||||| ||||| |||| ||| | ||||||||||||||| || ||||||||||||||||    
T  14112300 aaatttatcaagattagatattgacatcagatgaagatgggttaaagaggttagattagacaaccact 14112367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 14026643 - 14026851
Alignment:
Q  24 agaaaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaaga 123  Q
    ||||||||||||||  ||||  ||||||||||||||||||||||| ||||||||||  |||||  |||||| |||  |||| |||||||||||||||||     
T  14026643 agaaaggtcaagctttacaagattggaacttatgtttgacacccaatggaatatcaaggatgatgcaaagtggttatcagatagatcaaggatagaaagg 14026742  T
Q  124 gaagtggaaaggttgaatttagaatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgc 223  Q
    |||||||||| |||||| || || |||||    ||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || ||  |    
T  14026743 gaagtggaaaagttgaacttggattgactcaatgaatggataaaatgatcagaaaggccacaattttgtaaacttagttctctcagttttggtaacttac 14026842  T
Q  224 caaccattt 232  Q
    |||||||||    
T  14026843 caaccattt 14026851  T

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Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 83 - 314
Target Start/End: Complemental strand, 13873692 - 13873461
Alignment:
Q  83 atgacacaaagttgttcccagagagatcaaggatagaaagagaagtggaaaggttga-atttagaatgacttggggaaaggataaaatgatcagaaaggc 181  Q
    |||||||||||||||||| |||||| ||||||||||| |||||| |||||| ||| | ||||| || |||| |  |||||  ||| |||||||||||| |    
T  13873692 atgacacaaagttgttccgagagaggtcaaggatagagagagaactggaaaagttaagattta-aaggactcgatgaaagagtaatatgatcagaaagac 13873594  T
Q  182 cacaattttctaaactcagttctctcaattttgttagctcgccaaccatttgcagccaattattaaatctatcaagatttgatatcgacagcaggtaaag 281  Q
    ||||| |||||||||| |||||| ||| ||||| |||||  ||||||| ||||| |||| ||||||||||||||||||| ||||| |||| ||  | |||    
T  13873593 cacaactttctaaacttagttctttcagttttggtagcttaccaaccaattgcaaccaactattaaatctatcaagattagatattgacaacatctgaag 13873494  T
Q  282 atgggttaaagaagtaagattagacaaccactt 314  Q
    ||||||||||||||| |||||  ||||||||||    
T  13873493 atgggttaaagaagttagattcaacaaccactt 13873461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 46 - 311
Target Start/End: Complemental strand, 13891445 - 13891180
Alignment:
Q  46 ttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaagtggaaaggttgaatttag 145  Q
    |||| ||| |||||||||||||| ||||||||||  |||||  | |||||||||  |||||||||||||||||||||||| |||||||  ||||| || |    
T  13891445 ttgggactaatgtttgacacccactggaatatcaaagatgatgcgaagttgttcgaagagagatcaaggatagaaagagatgtggaaaaattgaacttcg 13891346  T
Q  146 aatgacttggggaaaggataaaatgatcagaaaggccacaattttctaaactc-agttctctcaattttgttagctcgccaaccatttgcagccaattat 244  Q
    | | |||    ||| |||||||||||||||||||||||||| ||  ||| ||| |||||||||| ||||  |||||  ||||||||||||| |||| |||    
T  13891345 atttactcaaagaatggataaaatgatcagaaaggccacaacttattaa-ctctagttctctcagttttagtagcttaccaaccatttgcaaccaactat 13891247  T
Q  245 taaatctatcaagatttgatatcgacagcaggtaaagatgggttaaagaagtaagattagacaacca 311  Q
    |  || |||||||| | ||||| |||| || || ||||||||||||||||||||||||||| |||||    
T  13891246 tggatttatcaagactagatattgacaacatgtgaagatgggttaaagaagtaagattagataacca 13891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 166 - 313
Target Start/End: Original strand, 14048917 - 14049064
Alignment:
Q  166 aaatgatcagaaaggccacaattttctaaactcagttctctcaattttgttagctcgccaaccatttgcagccaattattaaatctatcaagatttgata 265  Q
    ||||||||||||||| |||||| |  |||| | ||||||| |||||||| |||||  |||||||||| || | || |||||||||||||||||||  |||    
T  14048917 aaatgatcagaaaggtcacaatctgttaaatttagttctcccaattttggtagcttaccaaccatttccaacaaactattaaatctatcaagattcaata 14049016  T
Q  266 tcgacagcaggtaaagatgggttaaagaagtaagattagacaaccact 313  Q
    | |||  || || |||||||||||||||||||||||||||||||||||    
T  14049017 ttgacgacatgtgaagatgggttaaagaagtaagattagacaaccact 14049064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 14048838 - 14048918
Alignment:
Q  46 ttggaacttatgtttgacacccattggaatatcatcgatgacacaaagttgttcccagagagatcaaggatagaaagagaa 126  Q
    |||| ||| |||||||||||||| |||||||||   |||||| |||||||||||| |||||||||||||||||||||||||    
T  14048838 ttgggactaatgtttgacacccaatggaatatcgaggatgacgcaaagttgttccaagagagatcaaggatagaaagagaa 14048918  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 80
Target Start/End: Original strand, 14086109 - 14086172
Alignment:
Q  17 ggttaaaagaaaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcat 80  Q
    ||||||| |||| |||||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  14086109 ggttaaatgaaatgtcaagcttaacaagattggaacttatgtttgacaccaattggaatatcat 14086172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 313
Target Start/End: Original strand, 14026857 - 14026890
Alignment:
Q  280 agatgggttaaagaagtaagattagacaaccact 313  Q
    ||||||||||||||||||||||||||||||||||    
T  14026857 agatgggttaaagaagtaagattagacaaccact 14026890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 13942513 - 13942553
Alignment:
Q  24 agaaaggtcaagctcaacaatgttggaacttatgtttgaca 64  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  13942513 agaaaggtcaagctcaacaagattggaacttatgtttgaca 13942553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 14016529 - 14016585
Alignment:
Q  24 agaaaggtcaagctcaacaatgttggaacttatgtttgacacccattggaatatcat 80  Q
    ||||||||||||||||| ||  |||||||| |||||||||||||| || ||||||||    
T  14016529 agaaaggtcaagctcaataagattggaactcatgtttgacacccactgaaatatcat 14016585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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