View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_4 (Length: 718)
Name: NF13119_low_4
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 238 - 697
Target Start/End: Original strand, 32101997 - 32102457
Alignment:
| Q |
238 |
ggaccgacggcttaaagaaagaaatgatcaacagtataagagaagagcttgaagagaaatggccatccttgaaaaagggtgtcacagatttttctttttg |
337 |
Q |
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| T |
32101997 |
ggaccgacggcttaaagaaagaaatgatcagaagtataagagaagagcttgaagagaaatgaccatccttgaaaaagggtgtcacagatttgtctttttg |
32102096 |
T |
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| Q |
338 |
gcaacacgagtggaattctcatggaaaatgtagtggtttttctcaactagattactttaaaacagctctaaaactatttgatgaacttagtttattgaaa |
437 |
Q |
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| T |
32102097 |
gcaacatgagtggaacggtcatgggaaatgcagtgctttttctcaactagattactttaaaacggctctgaaactatttgatgatgttagtttattgaaa |
32102196 |
T |
|
| Q |
438 |
ctgctggaggaaaaccgatatgttcctactcttccaagtc-aaagatttggattaaacttcaaccttttgcaaccacaattaggtcaaatcttaaacttc |
536 |
Q |
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| T |
32102197 |
ctgctagaggaaaaccaatatgttccaactcttccaagtcaaaagatttggattaaacttcaaccttttgcaaccacaattaggtccaatctaaaacttc |
32102296 |
T |
|
| Q |
537 |
ctatgataagatgtattggtaggaaccaaaaacacctgcatgaagtagagttctgggtggatcctgacaacttagaattgattaactgtcaaactgtacg |
636 |
Q |
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| T |
32102297 |
ctatgataagatgtattggttggaaccaaaaacgcctgcatgaagtagacttctgtgtggatcctgataatttagaattgattaagtgtcaaacaaaacg |
32102396 |
T |
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| Q |
637 |
ccctcatctcacatattgtgctaatagcaaaaatggtgcatttgaatttagatgggtttta |
697 |
Q |
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| T |
32102397 |
ccctcctctcacatattgtgttcatagcaaaaatgttgcatatgaatttagatgggtttta |
32102457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 168 - 384
Target Start/End: Complemental strand, 35726610 - 35726393
Alignment:
| Q |
168 |
ccgtgtggttgagaataaattctcaatccacggcctccggccagata-aaaatctcatcaacatgtctgcaggaccgacggcttaaagaaagaaatgatc |
266 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||| |||| |||| ||| || ||| |||| | | ||| ||||| | || ||||||| |
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| T |
35726610 |
ccgtgtggttgagaataaattctcaatccagggcctctggctggatataaaacctcctctacaacactgctaaatcaacgacttaagggaaagaatgatc |
35726511 |
T |
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| Q |
267 |
aacagtataagagaagagcttgaagagaaatggccatccttgaaaaagggtgtcacagatttttctttttggcaacacgagtggaattctcatggaaaat |
366 |
Q |
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| T |
35726510 |
agaggtataagaaaagagcttgaagagaaattgtcatccttagaaaaggataccacagatttgcctttttgccaacacgagtggaacgctcatggaaaat |
35726411 |
T |
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| Q |
367 |
gtagtggtttttctcaac |
384 |
Q |
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||| | ||||||||||| |
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| T |
35726410 |
atagggatttttctcaac |
35726393 |
T |
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