View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_low_47 (Length: 269)
Name: NF13119_low_47
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_47 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 80 - 269
Target Start/End: Complemental strand, 49164514 - 49164325
Alignment:
| Q |
80 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
179 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164514 |
tagagattaatccaaccatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
49164415 |
T |
|
| Q |
180 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaatt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164414 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaatt |
49164325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 12874131 - 12874077
Alignment:
| Q |
150 |
gagcttgttccaacatcttcacttgcgtcaattctcaatttcttaagtggttgag |
204 |
Q |
| |
|
||||||||||||||| ||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
12874131 |
gagcttgttccaacaccttcacttgagtcacttctcaatttcttatgtggttgag |
12874077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 80 - 267
Target Start/End: Complemental strand, 43750980 - 43750793
Alignment:
| Q |
80 |
tagagattaatccaatcatgaatttattatacctttaacttggacaagtttaggaatgttttgcgatttggagcttgttccaacatcttcacttgcgtca |
179 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||| |||| |||||| || |
|
|
| T |
43750980 |
tagagattaatccaatcaagaattttttatacctttaacttggacaagtttaggattttttttcaatttggagcttgttccaacgtctttgcttgcgcca |
43750881 |
T |
|
| Q |
180 |
attctcaatttcttaagtggttgagaacttgaaatttgtgattttggtctactcttcttgtaagaaggttgctcatccaaaatttcaa |
267 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||||||||||||||||| |||||||| | | ||||| ||||||||| |||||| |
|
|
| T |
43750880 |
attctcgatttcttatgtggttgaagacttgaaatttgtgattttggtctagtcttcttgcatgtaggtttttcatccaaattttcaa |
43750793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University