View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_5 (Length: 674)

Name: NF13119_low_5
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_5
NF13119_low_5
[»] chr8 (1 HSPs)
chr8 (16-659)||(36118109-36118755)


Alignment Details
Target: chr8 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 16 - 659
Target Start/End: Complemental strand, 36118755 - 36118109
Alignment:
Q  16 atcatcaatcacgtaacataataggtcccacattatcatctctctctgggtagcactcgaggtatattattccnnnnnnnttattaggtggaaaattaaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||       ||| ||||||||||||||||    
T  36118755 atcatcaatcacgtaacataataggtcccacattatcatctctct--gggtagcactcgaggtatattattccaaaaaaattagtaggtggaaaattaaa 36118658  T
Q  116 gagaaagataaggnnnnnnnnnn----tcaatggcttcaatgtcaaagttcttatactacaagcctactttgagtatttatttatcatcacaaagcaaaa 211  Q
    |||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36118657 gagaaagataaggaaaaaaaaaaaaaatcaatggcttcaatgtcaaagttcttatactacaagcctactttgagtatttatttatcatcacaaagcaaaa 36118558  T
Q  212 ctatagtcctacactttttcttttcccgccctttaataattctactatttgcttaattttttctacttagtttcaataatttaatgtcattatatatt-a 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36118557 ctatagtcctacactttttcttttcccgccctttaataattctactatttgcttaattttttctacttagtttcaataatttaatgtcattatatattta 36118458  T
Q  311 atatcattagctatctctatcttttagtcaaacatttgtgcctgcttttctaatcaaaatcttcttttgcttcaaacattttgttcacataagctcaaac 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36118457 atatcattagctatctctatcttttagtcaaacatttgtgcctgcttttctaatcaaaatcttcttttgcttcaaacattttgttcacataagctcaaac 36118358  T
Q  411 aaactttttcccttcaaattctattgctttctcaatttaactcttattcttatgcttcaacttcaaacaaaaactctttcaattcagaagatggaaactg 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36118357 aaactttttcccttcaaattctattgctttctcaatttaactcttattcttatgcttcaccttcaaacaaaaactctttcaattcagaagatggaaactg 36118258  T
Q  511 tgaaaccaaaatcagcaatgaacagcaggagtaagaaatttgcaaagacattccagaaagttattagcctcaaaagtgcaacaaaaattgcttcaaacaa 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36118257 tgaaaccaaaatcagcaatgaacagcaggagtaagaaatttgcaaagacattccagaaagttattagcctcaaaagtgcaacaaaaattgcttcaaacaa 36118158  T
Q  611 tggcatttgcatgctcaactcacatctcaaagtgaaggaagatgaagat 659  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36118157 tggaatttgcatgctcaactcacatctcaaagtgaaggaagatgaagat 36118109  T

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