View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13119_low_50 (Length: 264)

Name: NF13119_low_50
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13119_low_50
NF13119_low_50
[»] chr1 (4 HSPs)
chr1 (19-253)||(46239181-46239415)
chr1 (115-150)||(52267926-52267961)
chr1 (185-249)||(37346157-37346221)
chr1 (190-247)||(35508725-35508782)
[»] chr7 (8 HSPs)
chr7 (32-212)||(34183206-34183386)
chr7 (32-212)||(34203795-34203975)
chr7 (27-150)||(31804702-31804827)
chr7 (34-253)||(15524521-15524747)
chr7 (45-212)||(25102900-25103065)
chr7 (110-189)||(3480595-3480674)
chr7 (48-99)||(17508676-17508727)
chr7 (48-99)||(17544487-17544538)
[»] chr8 (5 HSPs)
chr8 (82-247)||(511834-511998)
chr8 (110-249)||(8490824-8490964)
chr8 (191-249)||(40953534-40953592)
chr8 (48-99)||(40953380-40953431)
chr8 (110-249)||(43597064-43597195)
[»] chr5 (6 HSPs)
chr5 (19-237)||(39351399-39351620)
chr5 (45-150)||(12657933-12658038)
chr5 (38-189)||(8096008-8096156)
chr5 (185-249)||(21091062-21091126)
chr5 (185-249)||(31078167-31078231)
chr5 (185-237)||(33007808-33007860)
[»] chr3 (7 HSPs)
chr3 (45-249)||(43462772-43462978)
chr3 (32-188)||(46663338-46663498)
chr3 (116-247)||(41864791-41864919)
chr3 (185-249)||(40700825-40700889)
chr3 (23-100)||(21153348-21153425)
chr3 (185-249)||(28457582-28457646)
chr3 (167-230)||(44762451-44762512)
[»] chr4 (10 HSPs)
chr4 (92-229)||(3319924-3320061)
chr4 (185-249)||(37910463-37910527)
chr4 (45-103)||(3319849-3319907)
chr4 (199-249)||(45498973-45499023)
chr4 (38-99)||(11138740-11138801)
chr4 (54-99)||(17702285-17702330)
chr4 (78-122)||(54103163-54103207)
chr4 (185-247)||(34514142-34514204)
chr4 (185-249)||(36198615-36198679)
chr4 (185-249)||(44289426-44289490)
[»] chr6 (4 HSPs)
chr6 (186-249)||(32329639-32329702)
chr6 (185-249)||(12255411-12255475)
chr6 (164-249)||(12267591-12267675)
chr6 (185-249)||(9315106-9315170)
[»] chr2 (3 HSPs)
chr2 (79-150)||(12603952-12604023)
chr2 (48-99)||(13996112-13996163)
chr2 (185-249)||(13995538-13995602)
[»] scaffold0702 (1 HSPs)
scaffold0702 (45-110)||(3922-3987)
[»] scaffold0662 (1 HSPs)
scaffold0662 (45-110)||(4115-4180)
[»] scaffold0957 (1 HSPs)
scaffold0957 (52-111)||(1587-1646)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 46239181 - 46239415
Alignment:
Q  19 ttataaattattttgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgatta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46239181 ttataaattattttgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgatta 46239280  T
Q  119 attacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtgtgtatc 218  Q
    |||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  46239281 attacatgccatttttaaaatatttaattaatgatgagaaaaaaaatctcatttaattataatataataattatatcctctttattatcatgtgtgtatc 46239380  T
Q  219 taacatatgatatgattaacgtttatcatgttcat 253  Q
     ||||||||||||||||||||||||||||||||||    
T  46239381 gaacatatgatatgattaacgtttatcatgttcat 46239415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 52267926 - 52267961
Alignment:
Q  115 attaattacatgccgtttttaaaatatttaattaat 150  Q
    ||||||||||||||||||||||||||||||||||||    
T  52267926 attaattacatgccgtttttaaaatatttaattaat 52267961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 37346221 - 37346157
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| |||||||||||||| | ||| |||| |||||| |||||| |||||||||||    
T  37346221 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgt 37346157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 35508782 - 35508725
Alignment:
Q  190 tatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcat 247  Q
    |||||||| |||||| |||| |||| ||| |||| ||||||||||||| |||||||||    
T  35508782 tatatcatgtttgttgtcatatgtgcatcaaacacatgatatgattaatgtttatcat 35508725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 34183206 - 34183386
Alignment:
Q  32 tgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtt 131  Q
    |||||| ||||  ||||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |     
T  34183206 tgacattattacaaattcattccttacttattaccatgatattcttccgtttttaaaatgttgtctttacttacttatttataattaattacatgccata 34183305  T
Q  132 tttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtg 212  Q
    ||||||||||||||||||  | |||       ||||| ||||||||||||| |||||| ||||| | ||||||||||||||    
T  34183306 tttaaaatatttaattaactacgagagtaattttctcgtttaattataataaaataatgatatcctatttgttatcatgtg 34183386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 212
Target Start/End: Original strand, 34203795 - 34203975
Alignment:
Q  32 tgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtt 131  Q
    |||||| ||||  ||||||||||||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |     
T  34203795 tgacattattacaaattcattccttacttattaccatgatattcttccgtttttaaaatgttgtctttacttacttatttataattaattacatgccata 34203894  T
Q  132 tttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtg 212  Q
    ||||||||||||||||||  | |||       ||||| ||||||||||||| |||||| ||||| | ||||||||||||||    
T  34203895 tttaaaatatttaattaactacgagagtaattttctcgtttaattataataaaataatgatatcctatttgttatcatgtg 34203975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 31804827 - 31804702
Alignment:
Q  27 tattttgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgt--tgtcattccttacttatttatgattaattaca 124  Q
    |||| |||||||||||  ||||||||||||||||||||   ||||||| |  | ||||||||||||  ||||||| ||||||||||||| ||||||||||    
T  31804827 tattatgacatgattagaaattcattccttatttattatcctgatattatgtcatttttaaaatgttgtgtcatttcttacttatttataattaattaca 31804728  T
Q  125 tgccgtttttaaaatatttaattaat 150  Q
    |    || ||||||||||||||||||    
T  31804727 tatttttcttaaaatatttaattaat 31804702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 253
Target Start/End: Original strand, 15524521 - 15524747
Alignment:
Q  34 acatgattaagaatt-cattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttattta---tgattaattacatgccg 129  Q
    |||||||||| |||| || |||||||||||||| ||  |||||||||| ||||| |||||||| ||| | ||||||||||   | |||||||||||| |     
T  15524521 acatgattaaaaatttcactccttatttattaccatagtattcttccgcttttataatgttgtgatttcatacttatttatactaattaattacatgtca 15524620  T
Q  130 tttttaaaatatttaattaatgatgagnnnnnnnttctcattt---aattataatataataattatatcatctttgttatcatgtgtgtatctaacatat 226  Q
    ||| ||||||||||||| ||| | |||       |||||||||   ||||| |||| |||||| ||||| | ||||||||| |||||||||| || | ||    
T  15524621 tttgtaaaatatttaataaattacgagagtaattttctcatttaaaaattaaaataaaataatgatatcctatttgttatcctgtgtgtatcaaataaat 15524720  T
Q  227 gatatgattaacgtttatcatgttcat 253  Q
    ||||   ||||  ||||||||||||||    
T  15524721 gataaagttaatttttatcatgttcat 15524747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 25102900 - 25103065
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaaatattta 144  Q
    ||||||||| ||||||||||  |||||||||| || ||||||||||  |||  ||||||||||||| || ||||||||||||   |||||  |||||||     
T  25102900 aattcattctttatttattatcatgatattctcccatttttaaaatagtgttgttccttacttattaataattaattacatg--ttttttttaatatttt 25102997  T
Q  145 attaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtg 212  Q
    ||| || |||||       || |||||||||||||||| |||||| ||||  | ||||||||||||||    
T  25102998 attgattatgagagtaattttttcatttaattataataaaataatgatattctatttgttatcatgtg 25103065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 3480674 - 3480595
Alignment:
Q  110 ttatgattaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataat 189  Q
    |||| |||||||||||| | ||||||||||||||||| ||| |||||       || |||||||||||||||||||||||    
T  3480674 ttataattaattacatgtcatttttaaaatatttaatcaattatgagagtacttttttcatttaattataatataataat 3480595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 17508727 - 17508676
Alignment:
Q  48 tcattccttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    |||||||||||||||||  ||||| |||| || |||||||||||||||||||    
T  17508727 tcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatt 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 17544487 - 17544538
Alignment:
Q  48 tcattccttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    |||||||||||||||||  ||||| |||| || |||||||||||||||||||    
T  17544487 tcattccttatttattatcatgatgttctgccatttttaaaatgttgtcatt 17544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 511834 - 511998
Alignment:
Q  82 ttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataat 181  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||        |||||||||| ||||||     
T  511834 ttttaaaatgttgtcattccttacttatttataattaattacatgccgtttttaaaatatttaattaattacgaaagtaagtttctcatttagttataa- 511932  T
Q  182 ataataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcat 247  Q
    | |||||| ||||| | |||| ||||||||| | ||| |||| |||||| |||||| |||||||||    
T  511933 aaaataatgatatcttatttggtatcatgtgcgaatcaaacacatgataagattaatgtttatcat 511998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 249
Target Start/End: Complemental strand, 8490964 - 8490824
Alignment:
Q  110 ttatgattaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctc-atttaattataatataataattatatcatctttgttatca 208  Q
    |||| |||||||||||| | |||||| |||||||||||||| |||||       || |  ||||||||||||||  ||||| ||||||| ||||||||      
T  8490964 ttataattaattacatgtcatttttataatatttaattaattatgagagtaaatttttttatttaattataataagataatgatatcatgtttgttatgt 8490865  T
Q  209 tgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    |||||| ||| |||| ||||||  ||||| |||||||||||    
T  8490864 tgtgtgcatcaaacacatgataatattaatgtttatcatgt 8490824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 40953534 - 40953592
Alignment:
Q  191 atatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||||| |||||||||||||| | ||| |||| ||||||||||||| |||||||||||    
T  40953534 atatcatgtttgttatcatgtgcgcatcaaacacatgatatgattaatgtttatcatgt 40953592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 40953380 - 40953431
Alignment:
Q  48 tcattccttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    ||||||||||||||||||  ||||||||| || |||||||||| ||||||||    
T  40953380 tcattccttatttattaccttgatattctgccctttttaaaatattgtcatt 40953431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 249
Target Start/End: Original strand, 43597064 - 43597195
Alignment:
Q  110 ttatgattaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcat 209  Q
    |||| |||||| ||||||| ||||||||||||||||||| | |||||       || |||||||||||||||         |||| || |||||||||||    
T  43597064 ttataattaataacatgccatttttaaaatatttaattagttatgagaacaattttttcatttaattataatg--------atattatatttgttatcat 43597155  T
Q  210 gtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    |||   ||| ||||||||||| |||||| |||||||||||    
T  43597156 gtgcccatcaaacatatgataggattaatgtttatcatgt 43597195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 39351399 - 39351620
Alignment:
Q  19 ttataaattattttgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttactta---tttatga 115  Q
    |||||||||||  |||||||||||| |||| ||| ||||||| |||| ||| |||| |  | |  ||||||||||||||||  |||||||   ||||| |    
T  39351399 ttataaattatcctgacatgattaaaaatttatttcttatttgttaccatggtattatgtcataattaaaatgttgtcatttgttacttactatttataa 39351498  T
Q  116 ttaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtgtgt 215  Q
    |||||||| |||| ||||||||||||||||||||| |  ||       ||||||||||||||||||| |||||| ||||||| |||||||||||||| |     
T  39351499 ttaattacgtgccatttttaaaatatttaattaattacaagaataattttctcatttaattataataaaataatgatatcatatttgttatcatgtgcgc 39351598  T
Q  216 atctaacatatgatatgattaa 237  Q
    ||| |||| |||||||||||||    
T  39351599 atcaaacacatgatatgattaa 39351620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 150
Target Start/End: Original strand, 12657933 - 12658038
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaaatattta 144  Q
    |||||||| |||||||||||| ||| ||||||| ||||||| |||||||||||||| ||| |||||||| |||||||||||| |||||||||||| ||||    
T  12657933 aattcatttcttatttattacaatggtattctttcgtttttcaaatgttgtcattctttatttatttataattaattacatgtcgtttttaaaatgttta 12658032  T
Q  145 attaat 150  Q
    ||||||    
T  12658033 attaat 12658038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 189
Target Start/End: Original strand, 8096008 - 8096156
Alignment:
Q  38 gattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaa 137  Q
    |||||| |||||||||  |||||||||  || ||||| |  ||||||||   ||||||||||| |||||||||||| |||||||||||| ||||||||||    
T  8096008 gattaaaaattcattctatatttattatcatcatattatgtcgttttta---tgttgtcattctttacttatttataattaattacatgtcgtttttaaa 8096104  T
Q  138 atatttaattaatgatgagnnnnnnnttctcatttaattataatataataat 189  Q
    ||||||||||||| | |||       ||||||||||||||| ||| ||||||    
T  8096105 atatttaattaataacgagagtaattttctcatttaattatgataaaataat 8096156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 21091126 - 21091062
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||| | |||||||||||||| | ||| |||| |||||| |||||| |||||||||||    
T  21091126 ataatgatatcttgtttgttatcatgtgcgcatcaaacacatgataggattaaggtttatcatgt 21091062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 31078167 - 31078231
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| |||||||||||||| | ||| |||| ||||||  ||||| |||||||||||    
T  31078167 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgatagaattaatgtttatcatgt 31078231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 237
Target Start/End: Complemental strand, 33007860 - 33007808
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaa 237  Q
    ||||| ||||| | |||||||||||||||| ||| |||| |||||||||||||    
T  33007860 ataatgatatcttgtttgttatcatgtgtgcatcaaacacatgatatgattaa 33007808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 43462978 - 43462772
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaaatattta 144  Q
    |||| ||||||||||||| |   |||| |||| |||||||||||| | | || |||||||||||||||| |||||||||||| | |||||||||||||||    
T  43462978 aatttattccttatttatcaacgtgatgttctgccgtttttaaaaaggtttctttccttacttatttataattaattacatgtcatttttaaaatattta 43462879  T
Q  145 attaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtgtgtatc--taacatatgatatgattaacgttt 242  Q
    |||||| | |||       ||||||||||||||||||| |||||| ||||  | | |||||||||||||| |||   ||||||||||| |||||| ||||    
T  43462878 attaattacgagagtaaatttctcatttaattataataaaataatgatatactatgtgttatcatgtgtgcatcaaaaacatatgatacgattaatgttt 43462779  T
Q  243 atcatgt 249  Q
    |||||||    
T  43462778 atcatgt 43462772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 188
Target Start/End: Original strand, 46663338 - 46663498
Alignment:
Q  32 tgacatgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatttatg----attaattacatgc 127  Q
    |||||||||||  |||||||||| |||||||||| |||||||  | || |||||||||| ||||||||||||||||||||||     ||||||||||||     
T  46663338 tgacatgattataaattcattccatatttattaccatgatataataccatttttaaaatattgtcattccttacttatttatttataattaattacatgt 46663437  T
Q  128 cgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataa 188  Q
    | ||||||||||||||||||||| | |||       ||||||||||||||||||| |||||    
T  46663438 catttttaaaatatttaattaattacgagaataattttctcatttaattataataaaataa 46663498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 41864919 - 41864791
Alignment:
Q  116 ttaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataattatatcatctttgttatcatgtgtgt 215  Q
    |||||||||||| |||||||||||||||||| ||||| |||       |||||||||||||||| || |||||| || || | ||||||||||||||||     
T  41864919 ttaattacatgctgtttttaaaatatttaataaatga-gagtaaat--ttctcatttaattatagtaaaataatgatttcttatttgttatcatgtgtgc 41864823  T
Q  216 atctaacatatgatatgattaacgtttatcat 247  Q
    ||| || | |||||| |||||| |||||||||    
T  41864822 atcaaatacatgataagattaatgtttatcat 41864791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 40700889 - 40700825
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| |||||||||||||||| ||| |||| |||||| |||||| |||||||||||    
T  40700889 ataatgatatcatgtttgttatcatgtgtgcatcaaacacatgataggattaatgtttatcatgt 40700825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 21153425 - 21153348
Alignment:
Q  23 aaattattttga-catgattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattc 100  Q
    ||||||| |||| ||| ||||| |||||||||||| |||||||| ||||||||||  ||||||| ||||||||||||||    
T  21153425 aaattatcttgatcataattaaaaattcattccttgtttattacaatgatattctgtcgttttt-aaatgttgtcattc 21153348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 28457646 - 28457582
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||| | |||||||||||||| | ||| ||||||||||| |||| | |||||||||||    
T  28457646 ataatgatatcttatttgttatcatgtgcgcatcaaacatatgataggattgatgtttatcatgt 28457582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 44762512 - 44762451
Alignment:
Q  167 tcatttaattataatataataattatatcatctttgttatcatgtgtgtatctaacatatgata 230  Q
    |||||||||| |||||||   || ||||||| |||||||||||||||| ||| |||||||||||    
T  44762512 tcatttaattgtaatatat--ataatatcatgtttgttatcatgtgtgcatcaaacatatgata 44762451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 3319924 - 3320061
Alignment:
Q  92 ttgtcattccttacttatttatgattaattacatgccgtttttaaaatatttaattaatgatgagnnnnnnnttctcatttaattataatataataatta 191  Q
    |||||||||||||||||||| | |||||||||||| | ||||| ||||||||||||||| | |||       | |||||||| ||||| || |||||| |    
T  3319924 ttgtcattccttacttatttctaattaattacatgtctttttttaaatatttaattaattacgagtgtaatttactcatttatttatagtaaaataatga 3320023  T
Q  192 tatcatctttgttatcatgtgtgtatctaacatatgat 229  Q
    |||||| |||||||||||||| |  || ||||||||||    
T  3320024 tatcatatttgttatcatgtgcgcctcaaacatatgat 3320061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 37910527 - 37910463
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||| | |||||||||||||||| ||| |||| ||||||||||||| |||||||||||    
T  37910527 ataatgatatcctgtttgttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgt 37910463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 3319849 - 3319907
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattcctt 103  Q
    |||||||||||||||| | |  ||||||||||  |||||||||||||||||||||||||    
T  3319849 aattcattccttatttttaatcatgatattctgtcgtttttaaaatgttgtcattcctt 3319907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 45499023 - 45498973
Alignment:
Q  199 tttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    |||||||||||||||| ||| |||| ||||||||||||| |||||||||||    
T  45499023 tttgttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgt 45498973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 11138740 - 11138801
Alignment:
Q  38 gattaagaattcattccttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    |||||| |||||||| ||| |||||||  ||||||||||| | |||||||||||||||||||    
T  11138740 gattaacaattcatttcttgtttattatcatgatattctttcatttttaaaatgttgtcatt 11138801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 17702285 - 17702330
Alignment:
Q  54 cttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||    
T  17702285 cttatttattatcatgatattcttccatttttaaaatgttgtcatt 17702330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 54103207 - 54103163
Alignment:
Q  78 ccgtttttaaaatgttgtcattccttacttatttatgattaatta 122  Q
    ||||||||||||||||||| |||||||||||||| | ||||||||    
T  54103207 ccgtttttaaaatgttgtccttccttacttatttttaattaatta 54103163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 247
Target Start/End: Original strand, 34514142 - 34514204
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcat 247  Q
    ||||| ||||| | |||||||||||||| | ||| ||||||||| |||||||| |||||||||    
T  34514142 ataatgatatcctatttgttatcatgtgcgcatcaaacatatgacatgattaatgtttatcat 34514204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 36198679 - 36198615
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| ||||||||||||||   ||| |||| |||||| |||||| |||||||||||    
T  36198679 ataatgatatcatatttgttatcatgtgcacatcaaacacatgataagattaatgtttatcatgt 36198615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 44289490 - 44289426
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| |||||||||||||| | ||| |||| |||| | |||||| |||||||||||    
T  44289490 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgagaagattaatgtttatcatgt 44289426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 249
Target Start/End: Original strand, 32329639 - 32329702
Alignment:
Q  186 taattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    |||| ||||||| |||||||||||||| ||||| |||| ||||||||||||| |||||||||||    
T  32329639 taatgatatcatatttgttatcatgtgcgtatcaaacacatgatatgattaatgtttatcatgt 32329702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 12255411 - 12255475
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| |||||||||||||| | ||| |||| |||||| |||||| |||||||||||    
T  12255411 ataatgatatcatgtttgttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgt 12255475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 12267591 - 12267675
Alignment:
Q  164 ttctcatttaattataatataataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    |||||||||| |||||||| |||||| ||||  | || ||||||||||| | ||| |||| ||||||||||||| | |||||||||    
T  12267591 ttctcatttatttataataaaataatgatatactattagttatcatgtgggcatc-aacacatgatatgattaatgattatcatgt 12267675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 9315106 - 9315170
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||| | |||||||||||||| | ||| |||| |||||| |||||| |||||||||||    
T  9315106 ataatgatatcttgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgt 9315170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 12604023 - 12603952
Alignment:
Q  79 cgtttttaaaatgttgtcattccttacttatttatgattaattacatgccgtttttaaaatatttaattaat 150  Q
    |||||||||||||||||||||||||| ||||||   ||||| | | ||| ||||||||||||||||||||||    
T  12604023 cgtttttaaaatgttgtcattccttatttattttaaattaaatgcgtgcggtttttaaaatatttaattaat 12603952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 13996163 - 13996112
Alignment:
Q  48 tcattccttatttattactatgatattcttccgtttttaaaatgttgtcatt 99  Q
    ||||||||||||||||| | |||||||||||| |||| ||||| ||||||||    
T  13996163 tcattccttatttattattttgatattcttccattttaaaaatattgtcatt 13996112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 13995602 - 13995538
Alignment:
Q  185 ataattatatcatctttgttatcatgtgtgtatctaacatatgatatgattaacgtttatcatgt 249  Q
    ||||| ||||||| ||| |||||||||| | ||| |||| |||||| |||||| |||||||||||    
T  13995602 ataatgatatcatgtttcttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgt 13995538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 3987 - 3922
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatt 110  Q
    |||||||||||| |||||||| |||||||| |  |||||||||||| ||||||||| |||||||||    
T  3987 aattcattccttctttattaccatgatattatatcgtttttaaaatattgtcattcattacttatt 3922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 4115 - 4180
Alignment:
Q  45 aattcattccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttatt 110  Q
    |||||||||||| |||||||| |||||||| |  |||||||||||| ||||||||| |||||||||    
T  4115 aattcattccttctttattaccatgatattatatcgtttttaaaatattgtcattcattacttatt 4180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 111
Target Start/End: Complemental strand, 1646 - 1587
Alignment:
Q  52 tccttatttattactatgatattcttccgtttttaaaatgttgtcattccttacttattt 111  Q
    ||||||||| |||| ||  ||||||||||||||||||||||||||||| | |||||||||    
T  1646 tccttattttttaccatagtattcttccgtttttaaaatgttgtcatttcatacttattt 1587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University