View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_53 (Length: 256)
Name: NF13119_low_53
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_53 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 44133836 - 44134070
Alignment:
| Q |
1 |
caaaataacttttgagtggtgttgctttgattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgttatt |
100 |
Q |
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| T |
44133836 |
caaaataacttttgagtggtgttgctt-gattctaacgtggagaaagaaataaaatcgtaatgtattcgttttgtagttgtgctattttatattgttatt |
44133934 |
T |
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| Q |
101 |
ctgatggcctcattaatcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgtcaca |
200 |
Q |
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| T |
44133935 |
ctgatggcctcactagtcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgtcaca |
44134034 |
T |
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| Q |
201 |
ctatttcaattgatgggtgaaggttagacgattaag |
236 |
Q |
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| T |
44134035 |
ctatttcaattgatgggtgaagattagacgattaag |
44134070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 50050895 - 50051131
Alignment:
| Q |
1 |
caaaataacttttgagtggtgttgctttgattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgttatt |
100 |
Q |
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| T |
50050895 |
caaaataacttttgagtggtgttgctt-gattctaacgtggagaaagaaataaaatcgcaatgtactcgttttgtagttgtgctattttatattgttatt |
50050993 |
T |
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| Q |
101 |
ctgatggcctcattaatcactacaaacaacttgaatgggcaacaacctaatggaatggccaacaacctaataaacaatgttcagattcttttacgtcaca |
200 |
Q |
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| T |
50050994 |
ctgatggcctcactagtcaccacaaacaacttgaatggtcaacaacctaat-gaatgggcaacaacctaataaacaatgctcgaattcttttacgtcaca |
50051092 |
T |
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| Q |
201 |
ctatttcaattgatgggtgaaggttagacgattaaggtt |
239 |
Q |
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| T |
50051093 |
ctatttcaattgatggatgaagattagacgattaaggtt |
50051131 |
T |
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