View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13119_low_56 (Length: 252)
Name: NF13119_low_56
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_56 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 4212472 - 4212692
Alignment:
| Q |
7 |
gtgagatgaatgaaaacaagacaaagccaaatttggattactattac-------ttggtaagtaagaaagggatattccagtaatttaacattaataacc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||||||| |
|
|
| T |
4212472 |
gtgagatgaatgaaaacaagacaaagccaaatttggattactattacatattacttggtaagtaagaaagggacattctagtaatt-aacattaataacc |
4212570 |
T |
|
| Q |
100 |
agaactttcttcgaaattatcctcccattcccatctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtatta |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4212571 |
agaactttcttcgaaattatcctccc------atctacccgtctctttcaaatattaaatatcatatcaaattaatataaatatataaagtttggtatta |
4212664 |
T |
|
| Q |
200 |
tttgtttctgcattcgcattcgcattcg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
4212665 |
tttgtttctgcattcgcattcgcattcg |
4212692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University