View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_62 (Length: 241)
Name: NF13119_low_62
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 34940535 - 34940326
Alignment:
| Q |
15 |
aagttaagatgagatatattaataacaatgacaattcatcccatacaaggtctgtgcagagtgaagcattcaaaagagttacaatgtcattcgtgcccta |
114 |
Q |
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|||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
34940535 |
aagtcaagatgagatatattaataacaacgacaatttatcccacacaaggtctgtgtagagtgaagcatccaaaagagttacaatgtcattggtgcccta |
34940436 |
T |
|
| Q |
115 |
aaaacgaagacaccat-nnnnnnnnnnnnnnnnntaattactcgtggacgctcaaacaaagaagcgaatgttttctccagtcgtaataactgaaattgaa |
213 |
Q |
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|||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
34940435 |
aaaacgaagacaccataaaaaaaaacatcaaaaataattactcgtggacacccaaacaaagaagcgaatgttttcaccaatcgtaataactgaaattgaa |
34940336 |
T |
|
| Q |
214 |
cgacacctgt |
223 |
Q |
| |
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|||||||||| |
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| T |
34940335 |
cgacacctgt |
34940326 |
T |
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