View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13119_low_64 (Length: 238)
Name: NF13119_low_64
Description: NF13119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13119_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 52770848 - 52771050
Alignment:
| Q |
18 |
agagaagcacaaataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgaga |
117 |
Q |
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| T |
52770848 |
agagaagcacaaataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgaga |
52770947 |
T |
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| Q |
118 |
cacaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcact |
217 |
Q |
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| T |
52770948 |
cacaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcact |
52771047 |
T |
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| Q |
218 |
ggt |
220 |
Q |
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||| |
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| T |
52771048 |
ggt |
52771050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 52766921 - 52767039
Alignment:
| Q |
55 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
154 |
Q |
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|||||||| |||||| ||||||||||||||| |||||| |||| |||||||||| ||||| |||||| | ||| |||| |||| ||||||||||||| |
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| T |
52766921 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
52767020 |
T |
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| Q |
155 |
ataccaccacaaattcctc |
173 |
Q |
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|| || ||||| ||||||| |
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| T |
52767021 |
atccctccacacattcctc |
52767039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 392926 - 392778
Alignment:
| Q |
53 |
acagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctg |
152 |
Q |
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||||||| |||||||||||| | | || |||| | ||| ||||||| |||||||| ||| ||||| || | ||| |||| ||||||||| || |||| |
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| T |
392926 |
acagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctg |
392827 |
T |
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| Q |
153 |
acataccaccacaaattcctctatattctttaggatatatctctgagtt |
201 |
Q |
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||| || ||||| || |||| |||||||| |||||||||||||||||| |
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| T |
392826 |
ccatgcccccacatatacctcgatattcttcaggatatatctctgagtt |
392778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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